Gene detail

Gene detail information of Glyur003531s00039537

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33330.1	2.00E-136	plant glycogenin-like starch initiation protein 3
NR	XP_004499061.1	0	PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 2-like isoform X1 [Cicer arietinum]
COG	YP_004303520.1	1.00E-13	glycosyltransferase (sulfolipid biosynthesis) protein [Polymorphum gilvum SL003B-26A1]
Swissprot	tr\|Q8GWW4\|GUX2_ARATH	0	UDP-glucuronate:xylan alpha-glucuronosyltransferase 2
trEMBL	tr\|I1M8L8\|I1M8L8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G09070.1}

Sequence

Transcript Sequence

>Glyur003531s00039537.1
TGGAGCTACATGAATGGTCTGTTCTGTCTTGCTTTGAGATTTACTCATAATTCTCTAACAACTACTTCCTAATCCTTGCCTCCTCAAACTAATAATCATATTTAACAACTACCCCATCTTAATTCACCAAAGGGGAACAACTCATTTTATACATATATAGACTAGTAACTAGTTCCCCTTCATTTGAGGCACTTCTTCTGCTAGCATTGCTCAAGGGGGATGGAAGTTCCTGGTCTTCAAAAGTTGGTGAAGACAGCACCTTCTAAAGCTTTGGTTATTAGGCTCAACTTGGTCTGTCTTGCCACCTTTCTGGTTGTTTATGCAACCCTTCTTCTCCGTCCATCTTCTTCAGTCTATTTCGATAATGCAGCCTCCCTTGTTAAGTGCTCCTTGAGTGAATGCCATCACAAGGCAGAAAAAAGCATAAAAATGAAAGCAGTATTGGAGGAATTGCCTCGAGCAAAATCAAGGAGGCCAAATAAGAATGTGACTAAGATAGAGGTGCCTAGCTTTATAGGTGAAATGGGGAAGAAAGGAATGAAGATAGGAATGGTGAACATGCTGCAGGAAGAAGAAGAAGAGGATGACATTGATGTGAGTGAATGGAGCTTATATGGAGAAACAATACCAATTCATTTTGAGAGGGTATCAGAGTTTTTCAATTGGACAGATTTGTTCCCTGAATGGATAGATGAGGANGAAGAGAGTGATGTTCCATCATGCCCTGAGATACCTATGCCAGAGTTTGCATCATATCATGAAAACATGGACTTAATAGTGGCAAAGTTGCCATGCAATTATCCAGAAGAAGGGTGGGGAAGGGATGTTTTCAGGTTACAAGTTCACCTTATTGTGGCAAATATGGCTGTGAAGAAGGGGAAAAANGACTGGAAGTGGAAGACCAAGGTTGTTTTTTGGAGCAAGTGTAGACCAATGCTGGAGCTGTTTAGATGCAATGATTTGGTTAAACAGGAAGGTGATTGGTGGTTTTATGAGGCTGATGCAAAGAGGTTNGAACAGAAGGTTTCATTGCCTGTTGGGTCCTGCACTTTGACTTTGCCTCTTTGGGAACAAGGGGATTCCCAAAAAAGGATCGACAAGGTGTACGACATGTCGAAGATGGAGCGAAGTGTGAGAAGCGGGGCAAGAACGAAACGCGAGGCCTATGCGACAGTGTTGCACTCCTCAGAAGGCTACGTTTGNGGTGCAATAACGCTGGCACAAAGCCTCCTCCAAACGGGAACTAAGCGCGACCTCATCCTCCTCATCGACAACTCCATCTCTACCCGCAAACGTCATGCATTGGCTGCTGCCGGATGGAAGATCCGAACCATCACCCGGATTCGTAACCCGAGAGCAGANAATGGCACCTACAATGAGTACAATTACAGCAAGTTCCGCCTGTGGCAACTCACCGACTATGACAAAGTTATCTTCATAGACTCTGACATCATCGCCCTCCGCAACCTTGACATCCTTTTCCACTTCCCCCAAATGTCTGCCACCGGCAACGACCAATCCATTTTCAACTCTGGCATCATGTGTCCTGATGAGTCGCCGGCATGAGGTGATTTCGTACAACGGCGGGGACCAAGGGTTCCTAAACGAGATATTCGTGTGGTGGCACAGGCTGCCGAGGAGGGTGAACTATCTGAAGAATTTNTGGGCAAACACGACCCTGGAGGCGAGCGTGAAGAACGGGTTGTTCGGGGCAGATCCTCCGAAACTGTATGCCATTCACTACTTGGGTTTGAAGCCTTGGCATTGCTACAGGGACTACGATTGTAACTGGGACGTGGGGGATCAAATAGTTTACGCCAGTGACGTGGCGCACCGACGTTGGTGGAGGCTCCATGATGAAATGGACAAGAANTTGCAGAGATTTTGTAGGTTAACGAGGCAACGTAGGACTGAGTTGAACTGGGAAAGGAGGAAAGCGGGTAAATTGGGGTTACCTAATCAACATTGGAAGATTAATATCACGGATCCTAGAAGATCTGGCTCTCTTTTGATGGTTGATTAATTAGGTTATAATCAACCTTTTTTTTTGTATTTTTCCTTTGCTTTATTTGTTTTTTCGATCCTCCCCTTTCCCTTCCTATGCCTTCATGTGGTATAGAGAGACACTTCACNTGGAGAGATTTTCCATGCAGGTTATTTATATATGTGTGAATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03531	13144	19089	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0009834 plant-type secondary cell wall biogenesis

GO:0045492 xylan biosynthetic process

cellular_component
GO:0005794 Golgi apparatus

molecular_function

GO:0015020 glucuronosyltransferase activity

GO:0016757 transferase activity, transferring glycosyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003531s00039537.1	PF01501.15	Glyco_transf_8	318	424	1.30E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.238
SRR1783600	control	9.273
SRR1783602	moderate drought stress	6.572
SRR1811619	moderate drought stress	6.288

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.220
DRR006520	Root Summer glycyrrhizin high producing strain	6.276
DRR006521	Root Winter glycyrrhizin high producing strain	0.051
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	3.528
DRR006524	Root Summer glycyrrhizin low producing strain	3.578
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.477
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.510

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.521
SRR2868004	Drought Stress (root)	40.620
SRR2967015	Control (root)	35.352

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.484
SRR9715740	Leaf	3.578
SRR9715741	Leaf	0.741
SRR9715739	Root	15.585
SRR9715742	Root	16.138
SRR9715743	Root	14.727

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.152
SRR8749028	MeJA induced 9h	0.061
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.232
SRR8749031	Uninduced	0.152
SRR8749032	Uninduced	0.063

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.471
SRR8400027	Control - Root	46.204