Gene detail information of Glyur003517s00036843 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G11940.2 | 4.00E-14 | ribosomal protein 5A |
| NR | AFK39266.1 | 7.52E-25 | unknown [Lotus japonicus] |
| Swissprot | tr|O65731|RS5_CICAR | 2.00E-22 | 40S ribosomal protein S5 (Fragment) |
| trEMBL | tr|I3SG74|I3SG74_LOTJA | 3.00E-25 | Uncharacterized protein {ECO:0000313|EMBL:AFK39266.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03517 | 503 | 1641 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.823 |
| SRR1783600 | control | 3.240 |
| SRR1783602 | moderate drought stress | 3.904 |
| SRR1811619 | moderate drought stress | 3.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.746 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.127 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.455 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.037 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.981 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.359 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.622 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.440 |
| SRR2868004 | Drought Stress (root) | 1.523 |
| SRR2967015 | Control (root) | 2.070 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.542 |
| SRR9715740 | Leaf | 0.148 |
| SRR9715741 | Leaf | 0.799 |
| SRR9715739 | Root | 0.029 |
| SRR9715742 | Root | 0.472 |
| SRR9715743 | Root | 0.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.237 |
| SRR8749028 | MeJA induced 9h | 0.682 |
| SRR8749029 | MeJA induced 9h | 0.201 |
| SRR8749030 | Uninduced | 0.890 |
| SRR8749031 | Uninduced | 0.280 |
| SRR8749032 | Uninduced | 1.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.232 |
| SRR8400027 | Control - Root | 0.349 |