Gene detail information of Glyur003512s00042886.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02070.1 | 4.00E-77 | indeterminate(ID)-domain 5 |
| NR | XP_003589675.1 | 5.41E-135 | Zinc finger protein [Medicago truncatula] |
| Swissprot | tr|Q8GYC1|IDD4_ARATH | 2.00E-103 | Protein indeterminate-domain 4, chloroplastic {ECO:0000303|PubMed:16784536} (Precursor) |
| trEMBL | tr|V7C6W5|V7C6W5_PHAVU | 4.00E-130 | Uncharacterized protein {ECO:0000313|EMBL:ESW25113.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03512 | 6893 | 17728 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003512s00042886.2 | PF12171.3 | zf-C2H2_jaz | 76 | 99 | 5.70E-05 |
| Glyur003512s00042886.2 | PF13894.1 | zf-C2H2_4 | 157 | 178 | 1.8 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.951 |
| SRR1783600 | control | 3.002 |
| SRR1783602 | moderate drought stress | 3.268 |
| SRR1811619 | moderate drought stress | 3.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.559 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.615 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.321 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.254 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.029 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.899 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.900 |
| SRR2868004 | Drought Stress (root) | 9.392 |
| SRR2967015 | Control (root) | 6.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.830 |
| SRR9715740 | Leaf | 9.735 |
| SRR9715741 | Leaf | 9.099 |
| SRR9715739 | Root | 0.199 |
| SRR9715742 | Root | 0.897 |
| SRR9715743 | Root | 0.628 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.040 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.974 |
| SRR8400027 | Control - Root | 1.222 |