Gene detail

Gene detail information of Glyur003510s00042075.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G66910.1	8.00E-99	Protein kinase superfamily protein
NR	XP_004498292.1	0	PREDICTED: probable receptor-like protein kinase At1g67000-like [Cicer arietinum]
COG	YP_001958461.1	7.00E-25	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|D7SFH9\|GPDL2_ARATH	2.00E-103	Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2 {ECO:0000305} (Precursor)
trEMBL	tr\|G7I982\|G7I982_MEDTR	0	Receptor-like kinase {ECO:0000313\|EMBL:AES59902.1}

Sequence

Transcript Sequence

>Glyur003510s00042075.1
GGAGTTTATCGGGAAGCTACAATAGTCACAGTGAGATTGAACATTCTCATAAACCCAGACTGCAAGCACCTACCCTGCACAATTTTGCACAGTGCCAAACACTCGTTGCTCAAGACAATGGTAAAAATGTTCTCTTCCATTGGATTGTTGTTGTTCATGGTTTGCGTTAATGCTGGGGAGCATGCAGTTGGGACAGGCACAGTTAATAATTGTCCAGATTTATCATGCGGAGATCAGGTCATCCGGTTCCCTTTCTGGATCAAAGGCCGCCATCCACCACCCTGCGGCTTTCCCGGCTTTGATTTATCTTGTTCCTCAAGTAATGAGACTCTAATTATTGATCTCCCTGGGTCAGTGAAGCTCATCGTCAAAAATATTGACTACACACAACAAACTATTGAGCTGTCTGATCCATATGGTTGCCTTTACAGACAACTCCACAACCTCACTCTATCAGCCTCTCGTTTCCAGTTCAAGCCCAAGCCCAGCTATGATGATGATTTTGGTGCCTATCAACTGTTCAATTGTTCACTAATGAATAGAGACTGGCTGGGCTCCTTTTTGGTACCGTGCCTATCCACCCCAAGCTCTCAAGCATACGCCATTCCATCTAGTGAATCCATCGGGTACCTGCCCCTGTCGTTTTGCACCAAAATGTTTAATGTTTCTTTCAACAAATTTGATTTTCTTCCCGACGACAACTTTCTTCGTTTGACATGGTCTGAGCCAAAGTGTAATCATTGCGAATCTATGGGAAACAGATGTGGGTGGAACTGGAAGAATAACACTACCAACAAGGAAATATATTGTTTCCCCAAAACCCCCAAAGGTTCATCAATTGCTCTAGTGACCACCACAGTCTACCACATCTATGACTCTTACATGCTGAAGAAAGAAAAACAAGCAATTATAGAAAAATTTCTACAAGACTATAGGGCTCTTAAGCCCACCAGATACTCTTATGCGGAAATCAAGAGAATCACCAACAATTTTGGGGACAAGTTGGGACAGGGAGCCTATGGAACTGTGTATAAAGGNANCATTTCNAAGGANTTTACAGTTGCTGTGAAGATCCTGAATGTTTCCCAAGGAAATGGGGAAAACTTCATCAATGAAGTTGGTACAATGGGTAGAATCCACCACGTTAACATTGTTCGCTTGGTCGGTTTCTGCGCCGATGGCTTTATAAGAGCTCTTGTTTATGAGTTCTTGCCAAATGGGTCACTGCAGAAGTTCATAAATTCACCAGACAACAGGCAAAACTTCCTTGGTTGGAAAAGGCTGCACGAAATTGCTTTAGGAATAGCTAAAGGGATTGAGTACCTCCATCAGGGTTGTGATCAACGCATTCTCCATTTTGATATCAAACCACAAAATGTGTTGCTAGATCACAACTTTGCTCCAAAAATATATGACTTTGGTCTAGCTAAATTGTGTTCAAGGGATCAGAGCATAGTGTCAATGACCACAGCTAGAGGAACTTTGGGCTACATTGCTCCCGAAGTTTTCTCAAGGAACTTTGGAAATGTGTCTTACAAGTCAGATGTTTATAGTTATGGAATGATGCTGCTTGAAACAATAGGAGGGAGGAAGATCACGGAGGACTTAGGGGAAAACACTGGCCATGTTTACTACCCAGAATGGATTTATAATCTTTTGGAAGAACGGGAGGAAATGAGAATTCATGTTGATGATGAAGGGGATGCAANGATTGCAAGGAAATTGGCCATTGTGGGACTTTGGTGCATTCAGTGGCATGCTATGGATCGACCATCAATGCAAATGGTGGTTCAAATGTTAGAGGGAGACGTGGACAGAACCCCAAAACCTCCTAATCCTCTTGCTTCTGGAGGACCAAGGAGAAAGAGGGAAAGTGCAACTGTGAGTGCAGCTGGTCGACACCTAACCCAAGATTTGGAAGTAATNCAAGAGTTAGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03510	4446	7283	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04733	IRAK4	EC:2.7.11.1	NF-kappa B signaling pathway	map04064
			Toll-like receptor signaling pathway	map04620
			Toll and Imd signaling pathway	map04624
			NOD-like receptor signaling pathway	map04621
			Neurotrophin signaling pathway	map04722
			Pertussis	map05133
			Tuberculosis	map05152
			Measles	map05162
			Influenza A	map05164
			Toxoplasmosis	map05145
			Leishmaniasis	map05140
			Chagas disease (American trypanosomiasis)	map05142

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

GO:0030247 polysaccharide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003510s00042075.1	PF13947.1	GUB_WAK_bind	31	100	5.10E-08
Glyur003510s00042075.1	PF00069.20	Pkinase	293	558	4.10E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.392
SRR1783600	control	0.237
SRR1783602	moderate drought stress	0.111
SRR1811619	moderate drought stress	0.065

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.881
DRR006520	Root Summer glycyrrhizin high producing strain	0.818
DRR006521	Root Winter glycyrrhizin high producing strain	0.451
DRR006522	Root Winter glycyrrhizin high producing strain	0.577
DRR006523	Root Summer glycyrrhizin low producing strain	1.273
DRR006524	Root Summer glycyrrhizin low producing strain	1.439
DRR006525	Leaf Summer glycyrrhizin high producing strain	35.662
DRR006526	Leaf Summer glycyrrhizin high producing strain	35.193

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.654
SRR2868004	Drought Stress (root)	3.621
SRR2967015	Control (root)	1.536

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.141
SRR9715740	Leaf	42.116
SRR9715741	Leaf	36.263
SRR9715739	Root	0.140
SRR9715742	Root	0.431
SRR9715743	Root	0.334

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.139
SRR8749028	MeJA induced 9h	7.618
SRR8749029	MeJA induced 9h	7.233
SRR8749030	Uninduced	1.554
SRR8749031	Uninduced	0.571
SRR8749032	Uninduced	1.588

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.334
SRR8400027	Control - Root	0.597