Gene detail

Gene detail information of Glyur003505s00041995

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G27180.1	8.00E-39	disease resistance protein (TIR-NBS-LRR class), putative
NR	XP_006595738.1	2.46E-122	PREDICTED: uncharacterized protein LOC100796436 [Glycine max]
Swissprot	tr\|Q40392\|TMVRN_NICGU	3.00E-33	TMV resistance protein N
trEMBL	tr\|G7K8I9\|G7K8I9_MEDTR	9.00E-122	Toll/interleukin-like receptor-protein {ECO:0000313\|EMBL:AET00490.1}

Sequence

Transcript Sequence

>Glyur003505s00041995.1
ATGTCCATTGCCGCCCACGATCAAAAGTACGATGTTTTTCTGAGTTATAGAGAGAAAGACACCGGCTTGAGCTTCACAGGTAATCTCTATGCTGCTCTGCGCGACAAGAGATTCAAGACCTTCTTCCTTCGTGGAAACGATATTGATCATGAAGATGAGCAAGTTTGGCACTCTATTCTCAAAGCAATTCAAGATTCAAGGATTTCAATTCTCGTTCTCTCCGAAAACTATGGATCCTCTACACGGTGTCTGGATGAACTCGTGAACATCCTTGAGTGTATGAGGACGAAAAACCAGCTGGTTTGGCCCATCTATTACGGAGTGGATCCCGGGCATGTAAGGCGTCAGACTGGTAGGTTTGGCGAATACATGGCTAAGTTAGAAGAAAGGTTTCAAGATAACCCTGAGAGGGTTCGGCAATGGAAGGAAGGTTTGTTTCAAGTAGCCAACTTGTTGCTGTTACGTCGCGATCCTTTATATTGTAGAAAATTGCGAACAGATGTGGCCATAATTGAGGTCGCAATGAGTTTTTATGGGAAAGATACCCGCTACTCCTTTACCAGATTCCTCTATCATGCTTTGCGTCGGAAGGGATTCAGAGCCTTCATGGATGACGAGGGATTGAAGGGTGGAAACCAAATTTCTAGATCCCTCCTCGACGCCATTGAAAAATCCAGGCTTTCAATTGTTGTCTTCTCTAAAAACTTTGCATATTCCACGTGGTGCCTGGATGAACTTGTCAATATTGTGGAGTGTATGAAGACTAAGAACCAACTGGTTTGGCCCATATTCTACAAAACAGAACAGTCTGATGTAAGCAATCAAACAAACAGTTACGGCAATGCCATGACTAAACATGAAGAGCGATTTGGAAAGGACTCTGAGAAGGTGCAAAAATGGAGATCAGCTTTGTCACAAGTTGCCTTGTTGGAAGGAGATCTGCATATCAATGGAAATGATCACGGGGAAAAGTTGAATTGGGTTCATACAACTGCAAGGGATAAGGATACTAAAGTTGATCTTGAAGGTGGATTAATGCTACTAATTAGAGATGACTCAAGGAAAGTCTCTACTCCAATCACTGCAAAGTATGGAAAGGCATTATTTACTAAGCTTTCTGGTGGGCATGCCGAGGGAACTCAATGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03505	15505	18182	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003505s00041995.1	PF01582.15	TIR	12	143	2.20E-27
Glyur003505s00041995.1	PF01582.15	TIR	175	305	8.80E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.640
SRR1783600	control	13.232
SRR1783602	moderate drought stress	6.418
SRR1811619	moderate drought stress	6.263

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.543
DRR006520	Root Summer glycyrrhizin high producing strain	11.768
DRR006521	Root Winter glycyrrhizin high producing strain	10.067
DRR006522	Root Winter glycyrrhizin high producing strain	8.955
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.324
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.323

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.461
SRR2868004	Drought Stress (root)	3.475
SRR2967015	Control (root)	8.860

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.181
SRR9715740	Leaf	8.128
SRR9715741	Leaf	35.030
SRR9715739	Root	8.125
SRR9715742	Root	43.213
SRR9715743	Root	39.255

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.865
SRR8400027	Control - Root	36.773