Gene detail information of Glyur003502s00042227 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G35980.1 | 7.00E-29 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | KEH41914.1 | 4.57E-69 | harpin-induced-like protein [Medicago truncatula] |
| Swissprot | tr|Q9SJ52|YLS9_ARATH | 7.00E-34 | Protein YLS9 |
| trEMBL | tr|A0A072VIT5|A0A072VIT5_MEDTR | 2.00E-69 | Harpin-induced-like protein {ECO:0000313|EMBL:KEH41914.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03502 | 4938 | 5624 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.539 |
| SRR1783600 | control | 0.408 |
| SRR1783602 | moderate drought stress | 0.110 |
| SRR1811619 | moderate drought stress | 0.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.161 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.159 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.135 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.588 |
| SRR2868004 | Drought Stress (root) | 6.667 |
| SRR2967015 | Control (root) | 3.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.436 |
| SRR9715740 | Leaf | 1.219 |
| SRR9715741 | Leaf | 4.086 |
| SRR9715739 | Root | 0.431 |
| SRR9715742 | Root | 0.867 |
| SRR9715743 | Root | 1.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.424 |
| SRR8749028 | MeJA induced 9h | 3.553 |
| SRR8749029 | MeJA induced 9h | 0.632 |
| SRR8749030 | Uninduced | 10.940 |
| SRR8749031 | Uninduced | 1.028 |
| SRR8749032 | Uninduced | 0.794 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.360 |
| SRR8400027 | Control - Root | 0.302 |