Gene detail

Gene detail information of Glyur003492s00045068

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16890.1	2.00E-23	disease resistance protein (TIR-NBS-LRR class), putative
NR	AES65510.2	6.85E-170	disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula]
Swissprot	tr\|O23530\|SNC1_ARATH	1.00E-24	Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1
trEMBL	tr\|G7IQ97\|G7IQ97_MEDTR	3.00E-170	Disease resistance protein (TIR-NBS-LRR class), putative {ECO:0000313\|EMBL:AES65510.2}

Sequence

Transcript Sequence

>Glyur003492s00045068.1
GGGTTTAAGGCGTTGAATTTTTTGGATTTTAAAGACTGCAAGTTCTTAACTGAACTACCTAGCTTCTCTGGAGTACCAAATTTGGAGGCACTGTGCCTTGATAATTGCACTAATTTAATTAGAATCCATGGCTCGGTTGGGTTTCTTGATAGACTTGTGTTGTTAAGTGCCCAAGGATGCAACCAACTAGAAATTTTGGCACCATGCATCCACTTGCCGTCTCTAGAGACTTTAGATCTTAGGGATTGCTCATGTCTTGAGAGCTTCCCAGAAGTATCGGGAGTGATGGAGAATATAAGAGAAATTTATTTGGACCGGACTGACATAGATAAATTACCATTTTCAATTGGAAATCTTGTTGGGCTCCAAAGATTATCCTTAAGGGAATGCCAAAAGCTGATTCAGCTACCAAATAGCATTCATATATTGCCTAAACTTAAGATAATAATGGCACATCATTGTAGGGGATTTCGGTTATTTGAGGACAAAAACAAAGAAAAAGTGGGTCCGGAAGTATTTCCAAAAGCCATGATTGTTTATAATAATAAAGGCAGGAGGATCTTACTTGACGTGTGTTCTCTTAACACATGCCCCAATAATGTCATAGAAATATTTCCTTTGTCTGTGGATATTCTATTCATGTTTAACGGGGCTGTAGAAGGGAGAGTGAATTGGTATAGGCTCGGAATGGAGGAATCACCCATGTGTTTTTGGTTCCGAAAGAAATTCCCCCATATAGCTCTATGTTGTGCTGGAAATCTTCCAATGTTGTATAAAGACAATATGGTGTTGGATTTCAAGTTTAGTGTACTCATCAATGGCACTAAGCAATTCACTTCCTCATGTAACTACGTATTTTCTGCAGAAAGTTTAAGGGGACACATACTTCTATGTGATCTAGCATGCAAAGTGGGCAGTGCATTTTCAGAACATGATTGGAATCAAGTAGAGATCTTATGGGAGTTGAAGTACCACAAGCCATGTAGTTCTGAATGGGAAATGGCCACTCACGATGTCATGACACAAATGAATATTTTAAGTTGGTCCTTCCTTTATGTCTACAAAGAATACAAGGAGGATGTCAAATTTATGTCTCCGTTTCAGGAATGTAGAGAGGATCAGAGAAGAAAAGAGACAGTGCGGGGCTTTCACTCAATGCTCAAACGTTACGAATTCTATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03492	22587	23768	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003492s00045068.1	PF00560.28	LRR_1	74	91	0.33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.119
SRR1783600	control	2.156
SRR1783602	moderate drought stress	1.172
SRR1811619	moderate drought stress	1.042

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.831
DRR006520	Root Summer glycyrrhizin high producing strain	8.986
DRR006521	Root Winter glycyrrhizin high producing strain	2.263
DRR006522	Root Winter glycyrrhizin high producing strain	2.134
DRR006523	Root Summer glycyrrhizin low producing strain	0.125
DRR006524	Root Summer glycyrrhizin low producing strain	0.223
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.222
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.257

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.488
SRR2868004	Drought Stress (root)	1.527
SRR2967015	Control (root)	1.074

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.120
SRR9715740	Leaf	7.985
SRR9715741	Leaf	31.988
SRR9715739	Root	2.120
SRR9715742	Root	9.218
SRR9715743	Root	8.018

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.470
SRR8749028	MeJA induced 9h	0.276
SRR8749029	MeJA induced 9h	0.382
SRR8749030	Uninduced	0.530
SRR8749031	Uninduced	0.382
SRR8749032	Uninduced	0.870

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.630
SRR8400027	Control - Root	5.962