Gene detail

Gene detail information of Glyur003483s00042652.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38400.2	1.00E-18	alanine:glyoxylate aminotransferase 3
NR	XP_003548722.1	2.26E-35	PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Glycine max]
COG	YP_005446575.1	3.00E-17	aminotransferase [Phycisphaera mikurensis NBRC 102666]
Swissprot	tr\|Q94AL9\|AGT22_ARATH	9.00E-34	Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial (Precursor)
trEMBL	tr\|K7MGE8\|K7MGE8_SOYBN	9.00E-36	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G17820.1} (Fragment)

Sequence

Transcript Sequence

>Glyur003483s00042652.1
TCTCAAATAGACTCTCTATACTTTCGGGACTAACCCACGAGCACTCTGCCCGCTACTCCTGGGGATTTTATTCAATAATTTTCAGGACCAACCCACGAGTATTCAACCCGCTACTACTGCAGATTTTACCCTCTTAATTTCGGGACAATCTACGAGAAAAGAACTCGCTGCTCCTGGAGACTTTACTTCCTTAATTTCAAGACCAACCCATGAGAAATGGTAACCCGCTACTCCTGGAGATTTTACCTTAGAAATTTCGGCCCACAGCCACGAGCACTCACTAGCGCAAAATAGGGAATATAATTTACTTTTTAAATCGGTTATTAGCGGATCCGATTTAAAAACTAGACGCGGTGGCAATTTTGTAAATAANGATAGATTTTTTAAATCAGTTATATAAAAAACCGATTTAAAATATNTTTTTTGTTTTTGTCAACACTTTTTTATAACGGGTAAATGTCACTCGATTTTAAAAATTTACTTTTAAAATCAGTTATTAAAATAATCGGTTATTTGAATAACCGATTTAAAAAATGGCCTAAAATTTCAAACCCATTTCGTCTCCTTCTCCTTTTATCACTGCGCGCTTTTGCCTTTCTCCCTTTGCCTCCCAAAACCCTTACTCTCACTCTCAGCTCCTCACTCTCACTCTCACTCTCGCCTCCCTCTCACTCTCACTCTCACGCTCAGATCTTCTCTGTCGTGGCCATGACCGCCTCCCTCTCACTCTCACGTCTCAGCTCTTCTCCGCCGTGGCCCGTGACAACACTCTCTCTTCGTCTCTCTCACTGTCATTCTCTGCTCTTCTCCGCCGTGACAGCGCGCGAGCACCACGAGCAACGCCGCCGCCGCCACCATCTGTGACACCAAACATGGAACAATCGTAAAGCACCAACACGGACTGGTTAGGCGCTCTCTCTCTCTATCCCCTTCGCTCCTTGAAGCACCGTTAATTTGTTAGCGCCGTTAATTTGTTTACACCGTTAATCTATATAATCGATGGGCCCGTGACTTGATTAATTTGTTTGTTTGGGGACTTGCTTTCTACTTTTTGTTTACAGGAACAAATGAAAGAAGAAGAAGAAGAAGGTTGCAGCTTATATAGAAACGAAAATGGGTAAGAGTTTCTACCTTTCACACAGTCACAGTACCCATAAGGTAACCAACCTTCTTTCTGTCTGTGTAATCTGAACAAAACTGCTATTTTTCCTTCAGTTTCTTGTTGATTCCCAGTTGACCCTCTCTGTNCATGTTAAACCCATCTTTTTTATTTTAAATTGCTGAGTGAACTAGTACCTCAATGTGGAGCCTCTAGTTCTTTGATCAAGTGAGTTTGAAAACCAATTTTTTTCTCTCTNTTTTGTCTNTGAATCGATTGGCACAATTTATAGGCTAAAGTGGAGNCAAACAAATCTGTGTTCATTGTAGAGTTTGCAACTGTTGTGTCAATTTTATTGCCTTTTTTACAGGCTTTGCTTGAAATATAGACGATTCTTATTTGGTAGCATTAATTATAGTCGATAGTCTTTCTTTGATTTTGGTTACTTTTACTTTTGTAGAGAGTATTACTNTTTTGAAGCTATTATATGTACACTCTCTNGTCCCTGACTGTCATGTGGTCTGCCATTGCTTTTGCTGTGATTATGGAATTTGGTATTCATTGATAATCTTACCAGGTTGTTGGACCGTGTAGAAAACATATGGTAACAAGATGTTTGAGCTTTTGGCATATGAATTGAGTCATCCGATGATGCACCAGAAAGGGATCCAATGGACTGTAACNGGTGATGTGAGAGGAAGAGGCATGATGCTTGGAGTTGAACTTGTCATTGATCGTGAGCGTAAAACACCAGCAAAACANGTAACACTGCATGTCATGGACCAACTGAAAGAATTAGGAGTGCTGGTTGGAAAGGGTGGCTATTATGGAAACGTATTCAGAATTACTCCTCCCCTATGTTTCACCAAAGAAGATGCATGTCATTACCCTTAGCCTCAAATAAATCTCTATTTTGATCACATTAGATAAGAGAAATGCTAGTTAACACAATGTTCACCTTAATTTATCATGTTAAGAAAAAAATTGTACTATATCATCATCTATCTAGACTCCAGCAAGTAAAATTTATAAATTTTACATGCAAACTTAGACGTATAGTGGCCACCACTGTCTGTCATTGTAGAAAATGAATGAGCCAACAACTCGTTGTCTCCGTTATCTTTATCCCATCCTATAATTTTGTCAGCTGCTCCTTTATTTTTGGGTCTATGCCAATCCTGATATTTGATATTTGATGTTCTAAAACTAATGCTTGCATGGGCATCATGNGTTGTAAATCATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03483	3	6802	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00827	AGXT2	EC:2.6.1.44 2.6.1.40	Alanine, aspartate and glutamate metabolism	map00250
			Glycine, serine and threonine metabolism	map00260
			Cysteine and methionine metabolism	map00270
			Valine, leucine and isoleucine degradation	map00280

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0008483 transaminase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.246
SRR1783600	control	3.990
SRR1783602	moderate drought stress	2.970
SRR1811619	moderate drought stress	2.415

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.735
DRR006520	Root Summer glycyrrhizin high producing strain	4.808
DRR006521	Root Winter glycyrrhizin high producing strain	3.542
DRR006522	Root Winter glycyrrhizin high producing strain	3.648
DRR006523	Root Summer glycyrrhizin low producing strain	3.882
DRR006524	Root Summer glycyrrhizin low producing strain	3.591
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.465
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.668

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.010
SRR2868004	Drought Stress (root)	7.271
SRR2967015	Control (root)	7.063

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.169
SRR9715740	Leaf	0.051
SRR9715741	Leaf	0.096
SRR9715739	Root	0.000
SRR9715742	Root	0.027
SRR9715743	Root	0.329

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.047
SRR8749028	MeJA induced 9h	9.535
SRR8749029	MeJA induced 9h	3.116
SRR8749030	Uninduced	5.734
SRR8749031	Uninduced	1.541
SRR8749032	Uninduced	3.076

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.524
SRR8400027	Control - Root	1.173