Gene detail

Gene detail information of Glyur003480s00040676

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07040.1	2.00E-78	NB-ARC domain-containing disease resistance protein
NR	XP_003598415.1	0	NBS resistance protein [Medicago truncatula]
COG	YP_001516367.1	8.00E-09	hypothetical protein AM1_2038 [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q39214\|RPM1_ARATH	2.00E-97	Disease resistance protein RPM1
trEMBL	tr\|G7IVT3\|G7IVT3_MEDTR	0	NBS-LRR disease resistance protein {ECO:0000313\|EMBL:AES68666.1}

Sequence

Transcript Sequence

>Glyur003480s00040676.1
ATGGCAGATGCTGTAGTCTCGTTTGCACTGGAGCAAGTGTTCCAACTTCTAAGAGAAGAAGCAGTTCTGTTGAGGAGTGTATACAGGGATTTCTCAGACATCAAAGATGAACTAGAAAGCATTNAAGTCTTCCTCAAAGATGCAGATACAAGGGCCGCGGATGAAGCAGACACCAACAACGATGGAGTAAGAGCTTGGGTGAAGCAGCTTAGAGAAGCATCATTTCGCATTGAAGATGTCATTGATGAATACCTTCGGTTGATGCANAGGGTCAATCATCCTGGATGTTTTCGTGAAATCAAAGAAAGAAGTGAGAGGTACAAATTTCAGGCTTCTTATGAACAAGGATCATCAAGTAGCAGGAGCACAGGAGGAACAGAAGATGGAAGATGGCTTGGTCGTCGATTGGCTCCCTTTTTCATTGAAGAAACTGAAATTGTAGGATTTGAATTCCCGAGACAAGAATTGCTTGGTTGGATATTGGATGGTGCAGTTGATCGCGCTTTAATTTCGGTGGTTGAATTTGCCATGCCTAATAACAAAAAGGGTAGTAGGATCATAATCACCACTAGAATGATGCANGTTGCAGAGTTTTTCAAGAAGTNTTTTCTTGTTCATCATGTTCATANTCTGCAACTCTTGCCTCNGAACAAAGCGTGGGAACTCTTCTGCAACAAGGCATTTAGATNTGGGCATTGTCCACCAGAGCTTGAGAACATGTCTCGTCAAATCGTTCAAAAATGCAAGGGGCTACCACTAGCCATTGTGGCCATTGGTGGTCTGTTGTCATCAAAAGCAGAAACCACTTTTGAATGGCACAAGGTGGGANGAAACCTGAGCATGGAGTTAGAGCGTAATGCGCATTTGACTAGTTTAACAAAGATTTTATCTCTTAGTTACAATGACTTGCCATACTATNTGAAACCATGCCTTCTGTATTTCGGTACATATCCGGAGGACTACTGCATCAGTCGAGCAAGATTGATAAGGCAATGGATAGCTGAAGGGTTTGTCAAATACGAGGATAAAAGAAGCTTAGAGCAAGTTGCCGAGGAGTACTTAATGGAATTGATACAAAGAAGCCTAGTTCAAGTCTCCAGAGTTGGCTTTGNTGGGAAAATCAAAAGCTGTCAAATCCATGACTTGTTACGCGAAGTGATCATTAGAAAAATGAAAGATGTAAGTTTTTGCCATTTAGTTTCTGAAGACAATGAGGCAGTGACAGCTGAAATAACCAGACGCCTTTCTATAGCAGCAACTTGTTGTTCCAGCAATGTGTTGAGGAGCATTGGCCACTCTCGCATTCGTGCTATTTACGCTTTTGAAGAAGGCGATTCACCCCATCATTTTACAGGTAGAATCAATGTAAAGTCCAAGTTTTTAAAACTACTTGATTTTGAAGGTACTTGTTTGAGTCATGCTCCTGATAATTTGGGGAATCTTTTTCACCTGAAATACTTGAACCTGAGGAATACAAAAGTAAAGGTTCTTCCTAAATCCATTGGTAAGCTGCACAACTTGGAAACCTTGGATCTAAGACAAACGCTCGTGCGTGAGTTGCCAATTGAGATAAACAGCCTCTCAAAGCTGCGGCATCTTTGTGTCTACAATCGAAACTATGAAGCGAGTTATACTGTTTTGGGCTTTACATCCGGAGTGCGGATGCAGAAAGGTATTGGATGTTTGACGTCCCTACANAACCTTTATTTTGTGGAGGTAGATCATGGTGAATTAGACCTTATCCNAGAGCTCAAAAAGTTGAGGCAGTTAAGGAGGTTAGGCTTAAGGTGTGTACGGAAAGAACATGGNCATGCCTTATGTGCTTCAATACAAGCAATGAAGCACCTAGAATCCCTCAATATTACTGCAATAGCTGAGGATGAAGTCATGGACTTGAATTTGGTATCNTCTCCACTCCAACTTAGGCGTCTCCATTTAAAAGCGCGACTAGAGAGGTTGCCTGAGTGGATTCCAAAACTTGAGTATGTTGTTAAGCTAAGGCTGGCATTATCCATGTTNAAAGATGATCCACTAAAATGGNTNAAAAACTTGCCAAATCTGCTGTGGCTGGCTGTCTTGGAAAATGCCTATGATGGTGCAACTTTGCACTTCCAACAAGGCGGATTTCCGAAACTCAAGGAACTCTTTCTCGCTCACTTGGATAGAGTTGACACCATCATCATAGACAAAGGAGCTTTGCNTGTTCTTGAAGACTTCAAATTCAACAACATTCCGTGTCTCAAGGAAGTACCCGCCGGCATCAGACATTTGGAAAACCTTAAACTTNTGGACTTTGCTAACATGCCAAATGAGTTTGTTGAAAGCATAGATCCAGAAAAAGGGCAACACTACAGCATTATCAAGCATGTTCCCATTGTCTTTATTCGCCGCAAGGTTGGTCCNAAATTCCATGACTATGACATCCGCCCCATTCACCAGCCTGTGAAGCATCAAGTGGAAACAAANGATGGAAAGATTGATGGTGGAACTTTCTGCTACCATGCTGTTGGACAGTGCCAAGGTGGGGGTGCAACAAGAGCCGTGCATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03480	14790	19176	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003480s00040676.1	PF00931.17	NB-ARC	161	342	5.10E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.379
SRR1783600	control	0.313
SRR1783602	moderate drought stress	1.693
SRR1811619	moderate drought stress	1.755

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.372
DRR006520	Root Summer glycyrrhizin high producing strain	2.235
DRR006521	Root Winter glycyrrhizin high producing strain	1.343
DRR006522	Root Winter glycyrrhizin high producing strain	1.389
DRR006523	Root Summer glycyrrhizin low producing strain	2.429
DRR006524	Root Summer glycyrrhizin low producing strain	2.547
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.072
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.176

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.095
SRR2868004	Drought Stress (root)	9.574
SRR2967015	Control (root)	5.346

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.477
SRR9715740	Leaf	0.013
SRR9715741	Leaf	0.520
SRR9715739	Root	0.081
SRR9715742	Root	3.959
SRR9715743	Root	2.803

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.014
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.018
SRR8749030	Uninduced	0.046
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.082

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.746
SRR8400027	Control - Root	1.814