Gene detail

Gene detail information of Glyur003480s00040672

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07040.1	1.00E-105	NB-ARC domain-containing disease resistance protein
NR	XP_004499780.1	0	PREDICTED: disease resistance protein RPM1-like [Cicer arietinum]
COG	YP_007055001.1	2.00E-08	hypothetical protein Riv7116_1913 [Rivularia sp. PCC 7116]
Swissprot	tr\|Q39214\|RPM1_ARATH	4.00E-130	Disease resistance protein RPM1
trEMBL	tr\|V7BUQ1\|V7BUQ1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW20780.1}

Sequence

Transcript Sequence

>Glyur003480s00040672.1
ATGGCAGAAANTGCAGTATCCTTTGTTTTGGAGCAACTTTACCAACTTGTGACAGAAGAAGGAACTTTGCTAAAAGGGGTCCACAGAGACTTTGCAGACATCAAAGATGAACTTGAGAGCATTCAAGCCTTCCTCAAAGATGCAGATAGAAGAGCTTCAGATGAAGGAGGAGGAGGAGGATCCAACAACAATAACAATGAAGGGGTCAAAACATGGGTGAAGCAACTGAGAGAAGTATCTTTTCGCATAGAAGATGTGATTGATGAGTACATCATGTATATTGTGGCACCACAAACACAAAGGGTCAACAACAACANCAATAAAGCCATAGCTTCACTCCAAAAGGTTGCTACCCTCATCAAGACCGTGAAGCCACGTCATCAGATAGCATCTGAGATTCAAGATCTCAAGTCCTCAGTTCGTGGAATCAGAGAGAGAAGTGAAAGGTATGAGTTTCAGTCTTCTAATTCCATTCATAACAATAAAGGNTACTCTGCAGGAAGCTCCAAAAGGAGTACTAGGAGTACTAAAGATGCAAAATTTGGTGACCCTCGAATGGCTTCACTCTTCATTGAAGAGACTGAAGTGGTGGGGTTTGAGTCCCCAAGAGATGAGTTGGTTGGTTGTTTAGTGAATGGAACCNATGAGCGCATGTTGGTTTCTGTGGTTGGTATGGGAGGACTTGGAAAAACNACACTTGCTAAGCATGTTNTTGATAACAAGCAAGTGAAGATGCACTTTGATTGTCGTTCCTTCATCACTGTTTCTCAATCCTACACTGTGAGAGGGTTGTTGATAGAGATGATACAAAAGTTTTGNAAGGACAGTAATGAGCCTATTCCAAAGGGTTTGCACAAGTTNGATGACAACACATTGGTTAGTGAAGTGAGGCAATACCTTGAGTCAAAGAGGTACTTGGTTTTGTTTGATGATGTTTGGAGAGAAGATTTTTGTGATGAGATTGAACATGCCATGACTAATAATAAAAGGGGAAGTAGAGTCATAATCACCACTAGGAATATGCCTGTGGCTGAATATTGTAAGAAGTCTTTTCCTGTTCATGTTCATAGGCTAAAGCCTTTGTCTCCAGACAAGGCATGGGAACTGTTCTGCAAGAAGGCATTTAGATCTGATCCTGTAGGGCAGTGTCCAACTGAGCTTGAGGATATGTCCAATGATTTTGTTCAAAAGTGTNGAGGGCTACCNCTGGCAATTGTGGCCATNGGTGGTCTTTTGTCCACAAAAGCCAATAACATGTTTGAATGGAGGAAGGTGAGTACAAATCTGAGGATGGAGTTAGAGCGGAATGCGCATTTAACTAGCTTGACAAGGATTCTGTCTCTTAGTTATGATGATCTGCCTCATAATTTGAAATCATGTATGCTGTATTTTGGTATATATCCTGAGGACTACACCATCAAACGCAAGAGACTCACNAGGCAATGGATGGCTGAAGGGTTTGTTCGATACGAGGGGAGAAGAACTATGGAGGAAGTTGCTGAAGAGTACTTGATAGAGTTGATACATAGAAGTTTGGTTCAGGTTTCCAGACTTGGCTTTGATGGGAAAGTCAAAAGTTGTCAGGTCCATGATTTGTTGCGTGAAGTGATCATTGGAAAAATGAAAGATTTAAGCTTTTGNCATCTAACGCATGAAGATGANNAACAAGTCACAGTTGGAATAACTAGACGCTTTTCTGTAGCAGCTGGCTCCAACAATGTGTTGAGAAGCACTAATAACAAAGGNATTCGTGCTGTTTTTGTTTTTGACAAAGGGGAATTGCCTGAAAACTTCTTGAATAGNTTATCTACCAAGTTCANGCTTTTGAAAGTACTTGATTTTGAAAACTCNTTGTTGAATTATGTTCCTGATAATTTGGGGAACCTTTTTCACCTAAGGTACTTGAACCTNAGTCATACAAAAGTGAAGGTTCTTCCTANATCCATTGGTATGCTAGTGAACTTAGAAACCTTGGATCTAAGACAAGCGCTCGTGGAAGTGTTACCAAGGGAGATAAACAAGCTCACAAAGCTAAGGCTTCTTCCAGTTTATTATAGAAAGTATGAAGGGCACTATTCTGCTACAGGCTTCACAACTGGGGTGAAAATGCAANAGGGTATTGGATGCTTGAAATCTTTACAAAAGCTTTACTTTTTGGAAGCNGATCATGGTGGAATAGACCTTATCCAAGAGCTCAAAATGTTGAGACAGTTAAGGAAGTTAGGCATAAGGCGCGTGCGGACGGAATATGGGAATGCCTTGTGTGCTGCAATACAAGAGATGAACCAACTCGAGTCACTAAACATTGGTGTCATAGCTCAAGATGAAGTCCTTGACATGGATTTGATATCTGCTCCACCCCATCTCAGAGTGCTCAATNTGAAAGCTAGACTAACCAAGTTGCCTGATTGGATTCCAAAACTTGAGTATCTTGTGAAGCTAAGGCTTGTCTTATCTAACTTGGAATATGATCCACTAGAGTCTTTGAAGAAATTGCCAAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03480	3	2504	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003480s00040672.1	PF00931.17	NB-ARC	203	489	8.20E-76

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.609
SRR1783600	control	4.724
SRR1783602	moderate drought stress	7.014
SRR1811619	moderate drought stress	6.993

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.287
DRR006520	Root Summer glycyrrhizin high producing strain	4.148
DRR006521	Root Winter glycyrrhizin high producing strain	10.457
DRR006522	Root Winter glycyrrhizin high producing strain	9.927
DRR006523	Root Summer glycyrrhizin low producing strain	3.526
DRR006524	Root Summer glycyrrhizin low producing strain	3.461
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.518
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.446

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.037
SRR2868004	Drought Stress (root)	21.484
SRR2967015	Control (root)	19.114

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.559
SRR9715740	Leaf	7.487
SRR9715741	Leaf	13.122
SRR9715739	Root	0.761
SRR9715742	Root	8.894
SRR9715743	Root	8.365

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.048
SRR8749028	MeJA induced 9h	26.618
SRR8749029	MeJA induced 9h	12.906
SRR8749030	Uninduced	9.500
SRR8749031	Uninduced	10.504
SRR8749032	Uninduced	8.052

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.855
SRR8400027	Control - Root	9.858