Gene detail information of Glyur003474s00034635.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45220.1 | 9.00E-95 | Plant invertase/pectin methylesterase inhibitor superfamily |
| NR | KEH21378.1 | 4.83E-146 | pectinesterase [Medicago truncatula] |
| COG | YP_006407803.1 | 1.00E-41 | pectin methylesterase [Belliella baltica DSM 15883] |
| Swissprot | tr|O04887|PME2_CITSI | 5.00E-125 | Pectinesterase 2 (Precursor) |
| trEMBL | tr|A0A072TX14|A0A072TX14_MEDTR | 2.00E-146 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03474 | 23255 | 23944 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01051 | E3.1.1.11 | EC:3.1.1.11 | Pentose and glucuronate interconversions | map00040 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003474s00034635.1 | PF01095.14 | Pectinesterase | 1 | 214 | 5.40E-110 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.062 |
| SRR1783600 | control | 0.053 |
| SRR1783602 | moderate drought stress | 0.028 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.344 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.539 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.028 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.241 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.203 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.823 |
| SRR2868004 | Drought Stress (root) | 19.015 |
| SRR2967015 | Control (root) | 14.842 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.798 |
| SRR9715740 | Leaf | 3.001 |
| SRR9715741 | Leaf | 4.451 |
| SRR9715739 | Root | 0.072 |
| SRR9715742 | Root | 0.065 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.988 |
| SRR8400027 | Control - Root | 0.747 |