Gene detail information of Glyur003473s00042320 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G04220.1 | 2.00E-29 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | AFK37882.1 | 3.24E-58 | unknown [Medicago truncatula] |
| COG | YP_007069110.1 | 2.00E-08 | sulfatase-modifying factor protein [Calothrix sp. PCC 7507] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 3.00E-34 | TMV resistance protein N |
| trEMBL | tr|I3SC90|I3SC90_MEDTR | 1.00E-58 | Uncharacterized protein {ECO:0000313|EMBL:AFK37882.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03473 | 3635 | 4067 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003473s00042320.1 | PF01582.15 | TIR | 30 | 137 | 3.40E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.252 |
| SRR1783600 | control | 3.638 |
| SRR1783602 | moderate drought stress | 8.285 |
| SRR1811619 | moderate drought stress | 7.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.248 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.287 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.796 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.189 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.078 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.512 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.925 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.823 |
| SRR2868004 | Drought Stress (root) | 9.968 |
| SRR2967015 | Control (root) | 12.850 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.088 |
| SRR9715740 | Leaf | 5.915 |
| SRR9715741 | Leaf | 7.354 |
| SRR9715739 | Root | 0.697 |
| SRR9715742 | Root | 3.437 |
| SRR9715743 | Root | 1.988 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.830 |
| SRR8749028 | MeJA induced 9h | 3.569 |
| SRR8749029 | MeJA induced 9h | 0.443 |
| SRR8749030 | Uninduced | 0.926 |
| SRR8749031 | Uninduced | 0.383 |
| SRR8749032 | Uninduced | 0.419 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.663 |
| SRR8400027 | Control - Root | 14.664 |