Gene detail information of Glyur003472s00044315 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G56830.1 | 2.00E-43 | Protein of unknown function (DUF565) |
| NR | XP_004506525.1 | 1.36E-114 | PREDICTED: ycf20-like protein-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|O80813|YC20L_ARATH | 3.00E-28 | Ycf20-like protein |
| trEMBL | tr|I1J7U6|I1J7U6_SOYBN | 2.00E-114 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G33620.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03472 | 15744 | 17945 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003472s00044315.1 | PF04483.7 | DUF565 | 139 | 195 | 3.50E-18 |
| Glyur003472s00044315.2 | PF04483.7 | DUF565 | 139 | 195 | 3.50E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.655 |
| SRR1783600 | control | 1.125 |
| SRR1783602 | moderate drought stress | 1.342 |
| SRR1811619 | moderate drought stress | 1.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.670 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.536 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.212 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.129 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.206 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.284 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.975 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.017 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.346 |
| SRR2868004 | Drought Stress (root) | 4.525 |
| SRR2967015 | Control (root) | 7.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.855 |
| SRR9715740 | Leaf | 9.075 |
| SRR9715741 | Leaf | 9.582 |
| SRR9715739 | Root | 4.534 |
| SRR9715742 | Root | 12.412 |
| SRR9715743 | Root | 12.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.525 |
| SRR8749028 | MeJA induced 9h | 12.933 |
| SRR8749029 | MeJA induced 9h | 9.173 |
| SRR8749030 | Uninduced | 10.352 |
| SRR8749031 | Uninduced | 10.745 |
| SRR8749032 | Uninduced | 9.908 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.419 |
| SRR8400027 | Control - Root | 4.106 |