Gene detail

Gene detail information of Glyur003464s00045376

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G00430.1	8.00E-122	plasma membrane intrinsic protein 1;4
NR	XP_006429323.1	1.17E-161	hypothetical protein CICLE_v10012384mg [Citrus clementina]
COG	YP_007100376.1	2.00E-27	MIP family channel protein [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|Q39196\|PIP14_ARATH	4.00E-153	Probable aquaporin PIP1-4
trEMBL	tr\|A0A067EQS8\|A0A067EQS8_CITSI	4.00E-162	Uncharacterized protein {ECO:0000313\|EMBL:KDO53256.1}

Sequence

Transcript Sequence

>Glyur003464s00045376.1
GAAAGTTTTCAACCTTTGTCCCATTCCCACGCAACAAAATAATACCCTTCATCACTCGTGACTACATTAACTAGCTGANGAGTGCCATTTTCTGACATTACCAAATTCACCCAAATTAACCCAATTCCCCAAAAGGGTATACACTCACATTTCAAGAAATGGAAGGAAAAGATGATGTAAGAGTAGGAGCAAACAGGTTCAGAGAGANGCAACAGTTAGGAACTGAATCTCAGGGTGAAAAAGATGCAANAGACTACAAAGAACCACCCTCTGCACCTCTCATTGACCCAAGGGAATTATCATCATGGTCTTTCTACAGAGCTGGAATTGCAGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTGTTGACTGTGATGGGTGTGGCCAAATCAAAGAGCAAGTGCTCCACCGTGGGAGTTCAAGGCATTGCTTGGGCATTTGGTGGAATGATCTTTGCTCTTGTCTATTGCACTGCTGGTATTTCAGGGGGTCACATTAACCCAGCAGTGACATTTGGGCTATTCTTGGCACGCAAGCTCTCTCTGGTTCGTGCAGTGTTCTACATAATCATGCAGTGTTTGGGAGCTATCTCTGGTGCTGCTGTAGTTAAGGGCTTCCAACCACACCAATATGAGAGGCTTGGTGGTGGTGCCAACACTCTCAGTAAGGGATACTCCAAAGGTGATGGCCTTGGGGCAGAGATTATGGGTACATTTGTGCTTATTTTGGCACCACTGCCAATTGGTTTTGCTGTCTTTGTGGTGCATTTGGCTACAATTCCTATTAGTGGGTCCGGTATCAACCCAGCTAGAAGTCTAGGTGCTGCCCTTATATACAACAAGGACCAAGCTTGGGACGACCATTGGATTTACTGGGTAGGGCCCTTTATTGGGGCAGCACTTGCAGCTCTGTATCATCAGATGGTGATCAAGGGCATCCCCTTCAAGTCNAAGTGATGCATCATTGACATTAAAGTGGAAGCGATATGCATGCCTGAAAAATAATAAGTATAGTTTGAATCGGCGCGGAGACAGGATTCCCATGTAAGTGATGTTCCTATCTCTTCCACTATATATGGATCTTATTGATTTATATGTAAGATATATAATTTATCCGTTCCAAACTTATGTATGTGGACATACAATCGATCATAGTTATGGATATGTTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03464	11401	14753	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003464s00045376.1	PF00230.15	MIP	46	192	9.00E-48
Glyur003464s00045376.1	PF00230.15	MIP	192	255	1.50E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.887
SRR1783600	control	1.977
SRR1783602	moderate drought stress	1.500
SRR1811619	moderate drought stress	1.432

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.597
DRR006520	Root Summer glycyrrhizin high producing strain	11.668
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	17.118
DRR006524	Root Summer glycyrrhizin low producing strain	17.807
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.691

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.015
SRR2868004	Drought Stress (root)	7.329
SRR2967015	Control (root)	8.640

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.598
SRR9715740	Leaf	0.288
SRR9715741	Leaf	0.484
SRR9715739	Root	1.955
SRR9715742	Root	27.859
SRR9715743	Root	25.283

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.878
SRR8749028	MeJA induced 9h	0.308
SRR8749029	MeJA induced 9h	0.969
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.217
SRR8400027	Control - Root	9.973