Gene detail

Gene detail information of Glyur003457s00041966.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18880.1	5.00E-49	heat shock transcription factor A4A
NR	AGJ83756.1	5.95E-109	heat stress transcription factor A-4a-like protein [Caragana korshinskii]
Swissprot	tr\|O49403\|HFA4A_ARATH	2.00E-78	Heat stress transcription factor A-4a
trEMBL	tr\|R9R6C4\|R9R6C4_9FABA	2.00E-109	Heat stress transcription factor A-4a-like protein {ECO:0000313\|EMBL:AGJ83756.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03457	12903	14452	-

Gene family

Gene family	subfamily
Transcription Factors Family	HSF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009408 response to heat

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003457s00041966.1	PF00447.12	HSF_DNA-bind	16	106	5.80E-32

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.110
SRR1783600	control	0.183
SRR1783602	moderate drought stress	0.105
SRR1811619	moderate drought stress	0.112

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.319
DRR006520	Root Summer glycyrrhizin high producing strain	0.698
DRR006521	Root Winter glycyrrhizin high producing strain	1.189
DRR006522	Root Winter glycyrrhizin high producing strain	1.238
DRR006523	Root Summer glycyrrhizin low producing strain	1.770
DRR006524	Root Summer glycyrrhizin low producing strain	0.846
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.420
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.230

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.032
SRR2868004	Drought Stress (root)	0.074
SRR2967015	Control (root)	0.038

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.077
SRR9715740	Leaf	0.071
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.114
SRR9715743	Root	0.113

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.101
SRR8749029	MeJA induced 9h	0.023
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	1.329

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.000
SRR8400027	Control - Root	0.006