Gene detail

Gene detail information of Glyur003456s00036217

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G77090.1	4.00E-87	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein
NR	XP_003523403.1	4.01E-156	PREDICTED: psbP domain-containing protein 4, chloroplastic-like [Glycine max]
Swissprot	tr\|O49292\|PPD4_ARATH	1.00E-116	PsbP domain-containing protein 4, chloroplastic (Precursor)
trEMBL	tr\|C6TLZ1\|C6TLZ1_SOYBN	5.00E-155	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU23933.1}

Sequence

Transcript Sequence

>Glyur003456s00036217.1
ATGGCAACAACAGCCTTGTCCACAACCAGTGTGCTTTCATGGAGGAACCCACAGCACATGCATATTCAACCCTCTTCACAACCACCGTGCCATTCTTCAACTCAAAATGGAATTTTGAGAACCGTAGCTGCTTCCTTCTCAAAGGACAGTTTTTTGGTTAATGGAGAAAGTGAGAAATGTTCCCCTTTGTTGGTGAATAGAAGAACGGTTTTGGCTTCTGGGTTTTGCTTGTTGGGTTTTCCTGGAGTGAGTTTGGCTTTGGTGAAACAAGGTCCTCTAGCTGGGAGAATTCCTGGCCTGCAAGTATTTGATCAGACAGGTTGGAGGACATATCGGAGGCCAGATGAGAAGTCAGGAGGACATGGTGTTGGATGGAGTCCCATTATTCCATATACCTTCTCAGTGCCTGAAGAATGGGAAGAGGTACCTGTATCAATAGCAGATCTTGGTGGCACAGAGATAGATTTGAGGTTTGCCAGCTCTAAGGAAGGACGCCTGTTTGTCATTGTTGCGCCTGTTCTTAGATTNGCTGATAATGATATCAATCCTTACCGTGCAGATCTNGGTGATGACGCTACGATAGAAAAGATCGGAACTCCAGACAAAGTGATCAATGCGTTTGGTCCGGAAGTGATTGGAGAAAATGTAGAAGGGAAGGTTCTTAGTGCAAGTGTAGCAGAACATNAAGGAAGAACTTACTATCAGTTTGAGCTAGAGCCTCCTCATATTTTCATTACTGCCACTGCAGCTGGAAATCGCCTATACTTGTTTGGTGTAACCGGCAGTGGCCTTCAGTGGAAGAGACACTACAATGATTTGAAGAAAATAGCTGAGTCTTTCCGAGTTGTATNATTGGAATTTTCACTGAATTGAGAGTTCATGTGTATGCAGTTTTCTGTATCTGTAGAGTAGTATACTACACAACACAGAAGTTGTTTCCCACTACTTTTCCTGATTGGNATTTCAGTGAATCAAGAGATCAAATATGNAAAGTATTTTTCCCTTCAATATACCAAAACAGTTTTGTTACATTGTTATGCCTAGTGAGGAGGGAAGGTAGATGGTCTGCTAAAGTATACAGGAAATGCTATTCTTTCAGGCTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03456	17668	20456	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015979 photosynthesis

cellular_component

GO:0009523 photosystem II

GO:0009654 photosystem II oxygen evolving complex

GO:0019898 extrinsic component of membrane

molecular_function
GO:0005509 calcium ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003456s00036217.1	PF01789.11	PsbP	131	282	5.70E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.503
SRR1783600	control	1.166
SRR1783602	moderate drought stress	3.041
SRR1811619	moderate drought stress	2.524

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.699
DRR006520	Root Summer glycyrrhizin high producing strain	4.157
DRR006521	Root Winter glycyrrhizin high producing strain	6.367
DRR006522	Root Winter glycyrrhizin high producing strain	5.620
DRR006523	Root Summer glycyrrhizin low producing strain	3.723
DRR006524	Root Summer glycyrrhizin low producing strain	3.960
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.338
DRR006526	Leaf Summer glycyrrhizin high producing strain	31.664

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.945
SRR2868004	Drought Stress (root)	7.353
SRR2967015	Control (root)	5.181

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	108.773
SRR9715740	Leaf	179.362
SRR9715741	Leaf	122.165
SRR9715739	Root	2.118
SRR9715742	Root	4.446
SRR9715743	Root	3.331

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.439
SRR8749028	MeJA induced 9h	3.035
SRR8749029	MeJA induced 9h	2.481
SRR8749030	Uninduced	2.069
SRR8749031	Uninduced	0.569
SRR8749032	Uninduced	1.534

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.303
SRR8400027	Control - Root	4.380