Gene detail

Gene detail information of Glyur003449s00039863.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45440.1	5.00E-140	dihydrodipicolinate synthase
NR	XP_004492645.1	0	PREDICTED: 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like [Cicer arietinum]
COG	YP_270348.1	1.00E-105	dihydrodipicolinate synthase [Colwellia psychrerythraea 34H]
Swissprot	tr\|Q42800\|DAPA_SOYBN	0	4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic (Precursor)
trEMBL	tr\|I1L6T8\|I1L6T8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G40460.1}

Sequence

Transcript Sequence

>Glyur003449s00039863.1
GTTTATTTATAATTTATTTATTAATTAAATTAAATTAAGTGCGCACGCAGTCCTCGCCTGTCTCACCTTGTATGTTCGCAATTTCGCAGAAGTCCTCTTCGGACAGTACTACTACTGCACGCCGTCTTTAAAGTTCAGTTCACATCCTCTCTCTCTCTCGCCGCAAACAAAGTAAACAAACGCACCAACCACTACTCAAATCGACGCCGTTTTTCTCCTTTAGGGTTTTAATTTATATATCTATATTATCCCTGCGCGAGTTTAATCGCATCGGATTCGGATCTCTCTGTGAAGTGTGGTTTGAGTTATGGCCATTAGCAGCGTCTGCTTCAGAGGAACCGCTTTTCCAGTTTCCCCCTCCAATGTCACTACTAATAACAAAAACACCAGGAGCTCATGCTGGAAGCCTGCACAAGCTGCTGTGAAACCCAATTTCCACCTGCCAATGCGCAGTTTCGAGCTGAAAAATAGGACTTCTACAGAGGACATAAAGTGTCTGAGATTGATAACTGCCATTAAAACTCCATACCTACCTGATGGTCGGTTTGATCTCGAAGCATATGATGACTTGGTGAATATGCAGATTCAAAATGGAGTTGAAGGTGTTATTGTTGGTGGCACAACCGGTGAAGGCCAATTAATGAGCTGGGAAGAGCACATAATGCTTATTGCGCACACAGTCAACTGTTTTGGTGGGAAAATTAAGGTTATTGGAAATACTGGAAGCAACTCCACCAGGGAAGCAATTCATGCCTCTGAGCAGGGTTTTGCGGTTGGAATGCATGCTGCCCTTCATATAAACCCTTACTATGGCAAAACCTCCTTGGATGGTTTGGTTGCTCACTTTCAAAGTGTGCTTTCCATGGGCCCCACGATCGTATACAACGTGCCTTCACGGACTGGTCAAGACATTCCTCCACATGTAATTCAAACCTTGGCTCAAAGTACTAGCTTGGCTGGTGTCAAGGAATGCGTGGGAAATGACCGAATCAAAGAGTACACTGGGAATGGAATTGTTGTGTGGAGTGGGAACGATGATCAATGCCACGATGCCAGATGGGGTTATGGGGCTACTGGAGTGATATCTGTTGCAAGCAACTTGATCCCTGGTTTAATGCGAGACCTCATGTTTGGGGGCAAAAATCCCACACTGAATTCTAAGCTATTGCCTCTGATTGACTGGCTTTTCCACATGCCAAATCCCATTGGTTTGAACACGGCTCTTGCTCAACTTGGGGTTGTCAGGCCAGTTTTCAGGCTACCATTTGTACCTCTCCCTTTGGAGAAAAGGATAGAATTTAGCAATTTGGTGAAGGGAATTGGTCGAGAGCATTTTGTTGGAACTAAAGATGTTGAGGTTCTTGATGACGACGACTTTTTCTTGGTTAGTCGTTATTAATTTAGGTTACCTTGTAGACTTGGTGTATCCTTCCTGGGGATTTTGTCGAACTAAGAAAAAACAAGATTATGTTGTGGTAGTGAAATCAAGTAAACTGGACAATGATCTTGTTTCTTTTGACTTATTACTTTGTTGTTGGAAACTGGTTTCAAATTTTTTTTTTCTGAATTATAACTGCCTGCATATTGTGTTAACCTTGTTTAAATTCTGCCATACACCTTGATTCAAAAAAAAATAAAATTCTGCCATACACCCTTTTACAGACACAAACCCACTTATGTAATCTTAGAAGTCAAGTCTTCTGCTTAAAAACGTTGAGAGGTGGGACATCAAAGCAGTGAAACATTATTACAACGAAGAACAAATCCCTGATTTTCTTCCCTTACATATGTGTGTGTGTGTGTGTGAGAGAGAGAGAGTGTGACAGTTTGCTTTCCTTTAGTTTTCTGTTTGTGAAGTTGTGACTTTTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03449	13451	16674	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01714	dapA	EC:4.3.3.7	Biosynthesis of amino acids	map01230
			Lysine biosynthesis	map00300
			Monobactam biosynthesis	map00261

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0009089 lysine biosynthetic process via diaminopimelate

molecular_function

GO:0003824 catalytic activity

GO:0008840 4-hydroxy-tetrahydrodipicolinate synthase

GO:0016829 lyase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003449s00039863.1	PF00701.17	DHDPS	64	338	7.70E-101

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	154.255
SRR1783600	control	155.481
SRR1783602	moderate drought stress	53.492
SRR1811619	moderate drought stress	53.297

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	158.335
DRR006520	Root Summer glycyrrhizin high producing strain	156.494
DRR006521	Root Winter glycyrrhizin high producing strain	9.829
DRR006522	Root Winter glycyrrhizin high producing strain	9.711
DRR006523	Root Summer glycyrrhizin low producing strain	34.648
DRR006524	Root Summer glycyrrhizin low producing strain	34.219
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.403
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.432

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	149.924
SRR2868004	Drought Stress (root)	94.496
SRR2967015	Control (root)	67.510

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.674
SRR9715740	Leaf	31.036
SRR9715741	Leaf	27.027
SRR9715739	Root	191.146
SRR9715742	Root	176.565
SRR9715743	Root	185.185

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	68.634
SRR8749028	MeJA induced 9h	47.718
SRR8749029	MeJA induced 9h	56.427
SRR8749030	Uninduced	31.269
SRR8749031	Uninduced	17.224
SRR8749032	Uninduced	35.787

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	112.329
SRR8400027	Control - Root	139.643