Gene detail

Gene detail information of Glyur003449s00039862

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G01950.1	armadillo repeat kinesin 2
NR	XP_004492644.1	PREDICTED: LOW QUALITY PROTEIN: armadillo repeat-containing kinesin-like protein 2-like [Cicer arietinum]
Swissprot	tr\|Q9LPC6\|ARK2_ARATH	Armadillo repeat-containing kinesin-like protein 2
trEMBL	tr\|G7L0A2\|G7L0A2_MEDTR	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}

Sequence

Transcript Sequence

>Glyur003449s00039862.1
TTCAGTTTCCATTTCCAAAACCGCTAACACCCTCTTCTCATTTTTCCTCTCCTCTCCTCTCCTCTCCTCGATGGCTTCGAACCTTCACAGAAATGGAGCCCAAAGAGGAAGCGCCAAGTTCGATCGCCCCCTCAGGCCCCGCCACCGCCATTCCTCCCCCTCGCCGGCTTCCTCCCTCCGCCGCCCTGCCTCCTCCTCCCGAAACGACGCCGTGCCTGGAAGAGTTCGAGTGGCTGTAAGATTGAGACCTCGAAATGCTGAAGAAGAGATGGCAGATGCTGATTTTGGTGACTGCGTTGAATTACAACCAGAGCTTAAAAGACTGAAACTTCGTAGAAACAATTGGGATTCAGACACTTATGAGTTTGATGAGGTGCTTACCGAATATGCCTCACAGAAACGTGTCTATGAAGTCGTGGCTAAGCCAGTTGTGGAGAGTGTTCTTGATGGTTATAATGGAACTGTGATGGCTTATGGTCAAACTGGAACGGGGAAAACTTTTACTATTGGACAACTGGGGGAACGAGACGCCTCTGATCGTGGAATCATGGTGCGTTCCATGGAGGATATTCTTGCCGACTTATCTCCAGATACTGATACTGTCACTGTCTCGTATCTGCAGCTTTACATGGAGACTCTCCAGGACCTGCTTTATCCAGCAAATGATAACATTCCGATAAGTTTTATGGAGTTGTTAAGAGTAGGGGAAGCTAATCGAGTTGCTGCTAACACCAAATTGAATACTGAATCTTCTCGTAGTCACGCTATTCTGATGGTACATATTAAGAGGTCTGTCACAGAAAGTGAAGATATTGTATCTAGTCAAAATGGTGATGCCTCTCACTTGATCAAACCTTCAAAACCTCTTGTTCGGAAGAGCAAGTTGGTTGTGGTAGACTTAGCAGGTTCAGAGCGTGTCCAAAAGTCAGGAAGTGAAGGCCACATGCTTGAGGAAGCTAAATGTATCAATCTTTCACTTAGTTCACTGGGAAAATGTATTAATGCTCTAGCAGAGAACAGTGCTCATGTTCCATTTCGTGATTCAAAGCTTACCAGGATGCTCCGAGATTCTTTTGGCGGCACAGCTAGGACTTCATTGATAGTGACTATTGGTCCATCTCCACGTCATCGAGGAGAGACTTCTAGTACCATATTGTTTGGCCAAAGGGCTATGAAAGTTGAGAATATGCTGAAAATAAAGGAGGAGTTTGATTATAAAAGCTTGTCTCGAAAGCTTGAGGTACAATTAGATAAGCTTATTGCAGAAAATGAAAGGCAGCAGAAAGCTTTTGAGGATGAAGTTGAAAAAGTAAATTTGGAGGCACAATGTCGTATTGCTGAGGTTGAGAGAAACTTTGCAGATGCATTAGAGAAAGAGAGATTGAAATGCCAGATGGAGTATATGGAATTGGTAAAGGAGCTGGAGCAGAAACTGGTGTTGAATCAAGAAAGACATGACTGCAATAGTTTTGTGGATGATCATGGAGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03449	208	6436	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007018 microtubule-based movement

cellular_component
GO:0005871 kinesin complex

molecular_function

GO:0003777 microtubule motor activity

GO:0005524 ATP binding

GO:0008017 microtubule binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003449s00039862.1	PF00225.18	Kinesin	57	198	7.00E-33
Glyur003449s00039862.1	PF00225.18	Kinesin	205	370	1.10E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.071
SRR1783600	control	7.874
SRR1783602	moderate drought stress	5.846
SRR1811619	moderate drought stress	5.605

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.358
DRR006520	Root Summer glycyrrhizin high producing strain	6.311
DRR006521	Root Winter glycyrrhizin high producing strain	3.696
DRR006522	Root Winter glycyrrhizin high producing strain	3.323
DRR006523	Root Summer glycyrrhizin low producing strain	3.561
DRR006524	Root Summer glycyrrhizin low producing strain	3.609
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.790
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.445

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.618
SRR2868004	Drought Stress (root)	8.998
SRR2967015	Control (root)	9.618

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.264
SRR9715740	Leaf	3.045
SRR9715741	Leaf	4.843
SRR9715739	Root	0.724
SRR9715742	Root	8.476
SRR9715743	Root	6.162

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.944
SRR8749028	MeJA induced 9h	12.179
SRR8749029	MeJA induced 9h	4.246
SRR8749030	Uninduced	2.071
SRR8749031	Uninduced	0.942
SRR8749032	Uninduced	0.990

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.162
SRR8400027	Control - Root	14.184