Gene detail information of Glyur003440s00037456 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G33845.1 | 1.00E-52 | Nucleic acid-binding, OB-fold-like protein |
| NR | KHN15487.1 | 5.57E-89 | Hypothetical protein glysoja_038158 [Glycine soja] |
| COG | YP_003483168.1 | 2.00E-09 | nucleic acid binding OB-fold tRNA/helicase-type [Aciduliprofundum boonei T469] |
| Swissprot | tr|O49453|Y4844_ARATH | 5.00E-59 | Uncharacterized protein At4g28440 |
| trEMBL | tr|K7L2S5|K7L2S5_SOYBN | 9.00E-89 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G32130.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03440 | 19908 | 22118 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 72.866 |
| SRR1783600 | control | 72.572 |
| SRR1783602 | moderate drought stress | 73.543 |
| SRR1811619 | moderate drought stress | 72.752 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 106.397 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 109.915 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 38.098 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 38.377 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 101.987 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 101.833 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 37.144 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 36.674 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 59.068 |
| SRR2868004 | Drought Stress (root) | 62.146 |
| SRR2967015 | Control (root) | 52.234 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 25.742 |
| SRR9715740 | Leaf | 29.562 |
| SRR9715741 | Leaf | 24.512 |
| SRR9715739 | Root | 28.894 |
| SRR9715742 | Root | 46.343 |
| SRR9715743 | Root | 41.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 66.205 |
| SRR8749028 | MeJA induced 9h | 33.589 |
| SRR8749029 | MeJA induced 9h | 46.671 |
| SRR8749030 | Uninduced | 14.324 |
| SRR8749031 | Uninduced | 11.528 |
| SRR8749032 | Uninduced | 16.888 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 79.657 |
| SRR8400027 | Control - Root | 80.356 |