Gene detail information of Glyur003440s00037452 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G29500.1 | 2.00E-57 | HSP20-like chaperones superfamily protein |
| NR | XP_003608277.1 | 1.12E-97 | 18.2 kDa class I heat shock protein [Medicago truncatula] |
| COG | YP_006346949.1 | 2.00E-22 | molecular chaperone [Mesotoga prima MesG1.Ag.4.2] |
| Swissprot | tr|P27880|HSP12_MEDSA | 3.00E-97 | 18.2 kDa class I heat shock protein |
| trEMBL | tr|Q2HTU2|Q2HTU2_MEDTR | 4.00E-98 | Uncharacterized protein {ECO:0000313|EMBL:AFK46004.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03440 | 2701 | 3171 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003440s00037452.1 | PF00011.16 | HSP20 | 52 | 155 | 1.20E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 59.463 |
| SRR1783600 | control | 59.262 |
| SRR1783602 | moderate drought stress | 109.830 |
| SRR1811619 | moderate drought stress | 107.155 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 66.464 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 64.368 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.864 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.644 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 207.507 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 183.522 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.197 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 31.411 |
| SRR2868004 | Drought Stress (root) | 14.192 |
| SRR2967015 | Control (root) | 6.498 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.116 |
| SRR9715740 | Leaf | 4.662 |
| SRR9715741 | Leaf | 2.478 |
| SRR9715739 | Root | 42.674 |
| SRR9715742 | Root | 56.529 |
| SRR9715743 | Root | 59.766 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.497 |
| SRR8749028 | MeJA induced 9h | 2.409 |
| SRR8749029 | MeJA induced 9h | 3.374 |
| SRR8749030 | Uninduced | 0.681 |
| SRR8749031 | Uninduced | 0.487 |
| SRR8749032 | Uninduced | 5.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 77.328 |
| SRR8400027 | Control - Root | 82.627 |