Gene detail information of Glyur003438s00045226 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G73030.1 | 6.00E-49 | SNF7 family protein |
| NR | XP_004486804.1 | 2.87E-69 | PREDICTED: charged multivesicular body protein 1b-like [Cicer arietinum] |
| Swissprot | tr|A8JBB2|PESC_CHLRE | 3.00E-19 | Pescadillo homolog {ECO:0000255|HAMAP-Rule:MF_03028} |
| trEMBL | tr|I3SC18|I3SC18_MEDTR | 1.00E-67 | Uncharacterized protein {ECO:0000313|EMBL:AFK37810.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03438 | 22066 | 24659 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003438s00045226.1 | PF03357.16 | Snf7 | 5 | 88 | 8.30E-06 |
| Glyur003438s00045226.1 | PF06732.6 | Pescadillo_N | 143 | 226 | 4.40E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 58.717 |
| SRR1783600 | control | 61.310 |
| SRR1783602 | moderate drought stress | 65.429 |
| SRR1811619 | moderate drought stress | 67.744 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.816 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.151 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.224 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.795 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.306 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 27.867 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.757 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.599 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.362 |
| SRR2868004 | Drought Stress (root) | 11.778 |
| SRR2967015 | Control (root) | 13.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.070 |
| SRR9715740 | Leaf | 11.245 |
| SRR9715741 | Leaf | 14.304 |
| SRR9715739 | Root | 48.400 |
| SRR9715742 | Root | 29.164 |
| SRR9715743 | Root | 33.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.038 |
| SRR8749028 | MeJA induced 9h | 10.309 |
| SRR8749029 | MeJA induced 9h | 13.287 |
| SRR8749030 | Uninduced | 8.043 |
| SRR8749031 | Uninduced | 2.964 |
| SRR8749032 | Uninduced | 8.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.468 |
| SRR8400027 | Control - Root | 11.115 |