Gene detail information of Glyur003434s00039427 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G39130.1 | 2.00E-133 | Transmembrane amino acid transporter family protein |
| NR | XP_004506981.1 | 0 | PREDICTED: vacuolar amino acid transporter 1-like [Cicer arietinum] |
| Swissprot | tr|Q9FKS8|LHT1_ARATH | 2.00E-12 | Lysine histidine transporter 1 |
| trEMBL | tr|V7BKB2|V7BKB2_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW17473.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03434 | 13178 | 21687 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003434s00039427.1 | PF01490.13 | Aa_trans | 156 | 305 | 1.70E-25 |
| Glyur003434s00039427.1 | PF01490.13 | Aa_trans | 308 | 455 | 1.90E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.113 |
| SRR1783600 | control | 2.137 |
| SRR1783602 | moderate drought stress | 0.805 |
| SRR1811619 | moderate drought stress | 0.810 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.853 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.904 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.006 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.052 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.963 |
| SRR2868004 | Drought Stress (root) | 1.695 |
| SRR2967015 | Control (root) | 2.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.107 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.095 |
| SRR9715739 | Root | 0.092 |
| SRR9715742 | Root | 0.276 |
| SRR9715743 | Root | 0.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.839 |
| SRR8749028 | MeJA induced 9h | 5.028 |
| SRR8749029 | MeJA induced 9h | 1.864 |
| SRR8749030 | Uninduced | 4.983 |
| SRR8749031 | Uninduced | 1.391 |
| SRR8749032 | Uninduced | 4.472 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.126 |
| SRR8400027 | Control - Root | 4.387 |