Gene detail information of Glyur003431s00042291 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G29760.1 | 3.00E-96 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004515908.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cicer arietinum] |
| Swissprot | tr|Q9SJZ3|PP169_ARATH | 7.00E-123 | Pentatricopeptide repeat-containing protein At2g22410, mitochondrial (Precursor) |
| trEMBL | tr|G7LII9|G7LII9_MEDTR | 0 | SLOW growth protein, putative {ECO:0000313|EMBL:AET03355.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03431 | 7907 | 10269 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003431s00042291.1 | PF13041.1 | PPR_2 | 161 | 207 | 1.60E-09 |
| Glyur003431s00042291.1 | PF01535.15 | PPR | 275 | 300 | 0.00033 |
| Glyur003431s00042291.1 | PF01535.15 | PPR | 306 | 330 | 2.60E-05 |
| Glyur003431s00042291.1 | PF01535.15 | PPR | 415 | 443 | 0.0027 |
| Glyur003431s00042291.1 | PF01535.15 | PPR | 449 | 475 | 0.043 |
| Glyur003431s00042291.1 | PF01535.15 | PPR | 486 | 510 | 0.47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.346 |
| SRR1783600 | control | 1.382 |
| SRR1783602 | moderate drought stress | 1.126 |
| SRR1811619 | moderate drought stress | 1.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.535 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.511 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.505 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.529 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.432 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.399 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.049 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.654 |
| SRR2868004 | Drought Stress (root) | 1.810 |
| SRR2967015 | Control (root) | 1.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.306 |
| SRR9715740 | Leaf | 0.240 |
| SRR9715741 | Leaf | 0.518 |
| SRR9715739 | Root | 0.986 |
| SRR9715742 | Root | 0.784 |
| SRR9715743 | Root | 1.635 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.708 |
| SRR8749028 | MeJA induced 9h | 1.811 |
| SRR8749029 | MeJA induced 9h | 1.308 |
| SRR8749030 | Uninduced | 0.431 |
| SRR8749031 | Uninduced | 0.220 |
| SRR8749032 | Uninduced | 0.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.294 |
| SRR8400027 | Control - Root | 1.546 |