Gene detail information of Glyur003430s00042372 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G13540.1 | 8.00E-25 | |
| NR | XP_004497779.1 | 2.90E-128 | PREDICTED: probable DNA double-strand break repair Rad50 ATPase-like [Cicer arietinum] |
| trEMBL | tr|I1NEK7|I1NEK7_SOYBN | 3.00E-120 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G20630.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03430 | 14311 | 15854 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 38.694 |
| SRR1783600 | control | 39.236 |
| SRR1783602 | moderate drought stress | 52.916 |
| SRR1811619 | moderate drought stress | 52.510 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 33.282 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 32.930 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.978 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.982 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.379 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.102 |
| SRR2868004 | Drought Stress (root) | 2.774 |
| SRR2967015 | Control (root) | 2.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.810 |
| SRR9715740 | Leaf | 7.157 |
| SRR9715741 | Leaf | 3.519 |
| SRR9715739 | Root | 1.960 |
| SRR9715742 | Root | 10.034 |
| SRR9715743 | Root | 7.753 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.002 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.342 |
| SRR8400027 | Control - Root | 42.348 |