Gene detail

Gene detail information of Glyur003413s00043887

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G08455.1	2.00E-71	BTB/POZ domain-containing protein
NR	AFK48678.1	4.48E-136	unknown [Medicago truncatula]
Swissprot	tr\|Q6DBN1\|Y4845_ARATH	8.00E-108	BTB/POZ domain-containing protein At4g08455
trEMBL	tr\|I3T836\|I3T836_MEDTR	2.00E-136	Uncharacterized protein {ECO:0000313\|EMBL:AFK48678.1}

Sequence

Transcript Sequence

>Glyur003413s00043887.1
TAGGTTTGATTATGGTGGTGGTANTGGTAGCGACATCGACGATTACGACTACCCAGGGGAAGAGGAGGAGGAGGAAAACGTGACGATGATGCGGTGTCTCTCTTGCGACGAACACTACGAACCCGAAGACGCTGGAAGCTGCAAAGAGTGCTTCGGCGAGGCCAACGAGAAAGAGGAGGGACTCATGCTCCAGATCCAAGAACTCAAATCGAAGGTTTCCTTCCTCTCTCTTTCCTCTCCCCTCGATGCTCCTTCCACCACCGATCTCGTCCTTCTTCCCTCCGCCGATGACGCCTTCTCTTCCCCTGTTCCCGCTCACAGGGCCGTTCTGGTTAGTCGCTCTCCTGTTTTTAGAGCCATGCTTGAGAATGATATGNAGGAAAGCCGGAGCGGCACCATCAAGATTTCTGATGTATCATACGATTCTCTTCGTGCTTTTGTTAACTACTTGTACACTGCTGAAGCATGTCTTGATAACCAAATGGCCTGCAGCCTATTAGTTTTAGCAGAAAAGTATCAGGTGAAGCATCTCAAGGCACATTGCGAGAAGTATTTGATCTCCAAGCTGAACTGGGAGAAAGCTATTGCAAACTACGCCTTTGCGCACCGACACAATGCCAACCAATTGCTAGATGCAGCCTTGGCAATNATCCTAGAAAACATGGGCAGCCTNTCTCAAAATGAAGAATATGAGGAGCTGGTGGAGAATAATCCTCGTCTTGTTGTGGAAATATATGAAGCATATCTTGCCAAACAGGTTAATACTGCATCCACACTTAAGCTATAGGAATAGGGCATAGGAAAGTAATGTTGTCAGCTTTATTTAAACTGGGGTGAGAGTTTAGTTTGGATTATGGTGATTAGTCTGTGGTAGTATTTTAACTGGACATTATCATATAGTGCTACTACTACTACTACAGTTAAACATGCAATTGGACCTCTTTCAATTATGATCTACCTTGTAGATCTCCTTTTGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03413	3887	8023	+

Gene family

Gene family	subfamily
Transcription Factors Family	TRAF
Ubiquitin Family	BTB
Ubiquitin Family	3-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003413s00043887.1	PF00651.26	BTB	58	160	3.80E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.940
SRR1783600	control	29.330
SRR1783602	moderate drought stress	37.759
SRR1811619	moderate drought stress	37.411

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	65.731
DRR006520	Root Summer glycyrrhizin high producing strain	65.424
DRR006521	Root Winter glycyrrhizin high producing strain	28.232
DRR006522	Root Winter glycyrrhizin high producing strain	26.988
DRR006523	Root Summer glycyrrhizin low producing strain	78.094
DRR006524	Root Summer glycyrrhizin low producing strain	79.440
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.632
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.013

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.043
SRR2868004	Drought Stress (root)	42.039
SRR2967015	Control (root)	41.765

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.107
SRR9715740	Leaf	17.282
SRR9715741	Leaf	16.989
SRR9715739	Root	39.027
SRR9715742	Root	40.014
SRR9715743	Root	37.157

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	59.142
SRR8749028	MeJA induced 9h	24.488
SRR8749029	MeJA induced 9h	36.643
SRR8749030	Uninduced	14.428
SRR8749031	Uninduced	4.195
SRR8749032	Uninduced	9.582

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.229
SRR8400027	Control - Root	38.178