Gene detail information of Glyur003412s00039000 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G46680.1 | 8.00E-131 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| NR | XP_004499962.1 | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|P0C043|PP318_ARATH | 2.00E-165 | Putative pentatricopeptide repeat-containing protein At4g17915 |
| trEMBL | tr|G7KWS6|G7KWS6_MEDTR | 0 | PPR containing plant-like protein, putative {ECO:0000313|EMBL:AES78065.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03412 | 16068 | 19290 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003412s00039000.1 | PF13041.1 | PPR_2 | 41 | 87 | 9.50E-16 |
| Glyur003412s00039000.1 | PF12854.2 | PPR_1 | 108 | 138 | 4.10E-06 |
| Glyur003412s00039000.1 | PF13041.1 | PPR_2 | 152 | 201 | 6.40E-16 |
| Glyur003412s00039000.1 | PF01535.15 | PPR | 225 | 254 | 3.80E-05 |
| Glyur003412s00039000.1 | PF01535.15 | PPR | 261 | 290 | 0.0063 |
| Glyur003412s00039000.1 | PF13041.1 | PPR_2 | 292 | 341 | 3.20E-16 |
| Glyur003412s00039000.1 | PF13041.1 | PPR_2 | 363 | 407 | 1.30E-09 |
| Glyur003412s00039000.1 | PF15011.1 | CK2S | 436 | 505 | 1.00E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.739 |
| SRR1783600 | control | 0.721 |
| SRR1783602 | moderate drought stress | 0.815 |
| SRR1811619 | moderate drought stress | 0.768 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.287 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.227 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.326 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.338 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.718 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.669 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.596 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.718 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.892 |
| SRR2868004 | Drought Stress (root) | 1.372 |
| SRR2967015 | Control (root) | 1.736 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.369 |
| SRR9715740 | Leaf | 0.326 |
| SRR9715741 | Leaf | 0.388 |
| SRR9715739 | Root | 0.438 |
| SRR9715742 | Root | 0.418 |
| SRR9715743 | Root | 0.556 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.358 |
| SRR8749028 | MeJA induced 9h | 3.275 |
| SRR8749029 | MeJA induced 9h | 1.615 |
| SRR8749030 | Uninduced | 0.626 |
| SRR8749031 | Uninduced | 0.519 |
| SRR8749032 | Uninduced | 0.348 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.469 |
| SRR8400027 | Control - Root | 1.216 |