Gene detail information of Glyur003410s00041788 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G08920.1 | 0 | cryptochrome 1 |
| NR | NP_001240855.1 | 0 | cryptochrome-1-like [Glycine max] |
| COG | YP_004652658.1 | 9.00E-122 | hypothetical protein PUV_18540 [Parachlamydia acanthamoebae UV-7] |
| Swissprot | tr|Q43125|CRY1_ARATH | 0 | Cryptochrome-1 |
| trEMBL | tr|D0FZ14|D0FZ14_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G35020.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03410 | 6498 | 11913 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003410s00041788.1 | PF00875.13 | DNA_photolyase | 7 | 154 | 6.80E-34 |
| Glyur003410s00041788.1 | PF03441.9 | FAD_binding_7 | 198 | 472 | 4.50E-83 |
| Glyur003410s00041788.1 | PF12546.3 | Cryptochrome_C | 502 | 618 | 4.10E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.000 |
| SRR1783600 | control | 14.812 |
| SRR1783602 | moderate drought stress | 27.515 |
| SRR1811619 | moderate drought stress | 26.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.680 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.361 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 38.267 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 38.032 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.922 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.207 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 46.231 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 45.887 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.079 |
| SRR2868004 | Drought Stress (root) | 22.361 |
| SRR2967015 | Control (root) | 18.415 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 45.651 |
| SRR9715740 | Leaf | 48.128 |
| SRR9715741 | Leaf | 53.157 |
| SRR9715739 | Root | 5.038 |
| SRR9715742 | Root | 20.576 |
| SRR9715743 | Root | 16.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.579 |
| SRR8749028 | MeJA induced 9h | 3.237 |
| SRR8749029 | MeJA induced 9h | 2.960 |
| SRR8749030 | Uninduced | 2.798 |
| SRR8749031 | Uninduced | 3.763 |
| SRR8749032 | Uninduced | 2.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.626 |
| SRR8400027 | Control - Root | 26.381 |