Gene detail

Gene detail information of Glyur003407s00043765

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G03220.1	1.00E-63	Eukaryotic aspartyl protease family protein
NR	NP_001241217.1	0	uncharacterized protein LOC100818868 precursor [Glycine max]
Swissprot	tr\|P13917\|7SB1_SOYBN	3.00E-60	Basic 7S globulin low kDa subunit (Precursor)
trEMBL	tr\|C6TIX1\|C6TIX1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G02000.1}

Sequence

Transcript Sequence

>Glyur003407s00043765.1
ATGGCTACTACTTGTTCTGCCCTTCGTTTCATCCTCCTCTCAATGCCTCTTCTCTCACTCTTGTCTCAATCAGTTGCATTGAATTTGAATCCCCCAAAACCCAACACCTTTACCCTTCCCGTTGAGAAAGACCCATCAGCCCTTCAATACTCAACTTCCATAAAAATGGGAACCCCACCAGTCACCCTGAGTCTAGTCATCGACATAAGGGAACGCTTCCTATGGTTCGAGTGTGACGATTCGTACAATTCCTCAACCTACAACCCCGTCCGGTGCGGTACTACGAGGAAATGCAAGCTAGCCAAAGGCACGGACTGCATTAACTGTACCAACCACCCTCTCAAAACAGGGTGCACCAACAACACGTGCGGCGTCGAACCCTTCAACCCCTTCGCTGGGTTCTTCGTGAGCGGTGACGTGGGTGAGGATATCTTGTCTTTGAGAAANGTGCACGTGCCACGCTTCATCTCTTCCTGCGTGTACCCAAATAAATTTGGGGTTCAGGGATTTCTTCAAGGCCTTGCAAAGGGAAAGAAAGGAGTTCTAGGACTTGCAAGAACTGCTATTTCGCTTCCAACACAAATCGCAGCTAAATTTAACCTTAATCGTAAGTTTGCACTTTGTTTACCTTCACAAAAAAAAGAACTTGGGAATCTCTTTGTTGGTGGGGCCCCTCGTAACGCTTCTTCTTCCAAGTTACTTGCTTTCACTCCACTTGTTATCAACCGCCNTAGCACGGGTCCAATCTTTGACGACGGTCCTTCCACTGAGTACTTCATTCGTGTCAAGTCAATTAAAATTGACGGNAAAGTTGTTAACTTTAACACCTCCCTGCTCTCTATTGACAAACAGGGAAATGGGGGTACAAAACTCAGCACCGTGATTCCTCACACCAAGTTACACACTTCAATATACCGTCCAGTTTTGAGTGATTTTGTTAAGAAAGCTGCGGTGAGAAAGATGAAGAGGGTCACNGCGGTGGCACCGTTTGAGGCGTGCTATGATTCAAGGACCGTTCGGAAGACCGTGGCTGGACCGGATGTGCCAACGATTGATCTGGTTCTTAAGGGTGGAGTTCAGTGGAGAATCCATGGTTCCAATTCAATGGTCAAGGTTGGTAAAAATGTGTTGTGCCTTGGATTTGTGGATGCGGGTTCGGAGGAGGGTCCGTTGGAAACTTCGATTGTGATTGGTGGGCATCAGTTGGANGATAATCTTTTGGAGTTTGATCTGGTTTCCTCCAGGCTTGGTTTTTCCTCCTCCCTTTTACTCCACAATGCAAGCTGTTCCCACTTGGGGGTCTTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03407	11948	13255	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004190 aspartic-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003407s00043765.1	PF14543.1	TAXi_N	50	223	1.40E-35
Glyur003407s00043765.1	PF14541.1	TAXi_C	257	420	3.90E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.372
SRR1783600	control	0.374
SRR1783602	moderate drought stress	1.333
SRR1811619	moderate drought stress	1.233

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.249
DRR006520	Root Summer glycyrrhizin high producing strain	0.247
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.169
DRR006524	Root Summer glycyrrhizin low producing strain	0.154
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.143
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.139

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	62.777
SRR2868004	Drought Stress (root)	62.405
SRR2967015	Control (root)	76.197

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.647
SRR9715740	Leaf	0.790
SRR9715741	Leaf	0.672
SRR9715739	Root	0.941
SRR9715742	Root	0.607
SRR9715743	Root	0.555

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	68.693
SRR8749028	MeJA induced 9h	21.178
SRR8749029	MeJA induced 9h	62.047
SRR8749030	Uninduced	5.587
SRR8749031	Uninduced	1.450
SRR8749032	Uninduced	10.583

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.682
SRR8400027	Control - Root	3.311