Gene detail

Gene detail information of Glyur003407s00043764

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23610.1	3.00E-53	dual specificity protein phosphatase 1
NR	XP_004508377.1	2.94E-96	PREDICTED: dual specificity protein phosphatase 1-like isoform X1 [Cicer arietinum]
COG	YP_182654.1	4.00E-10	protein-tyrosine phosphatase [Thermococcus kodakarensis KOD1]
Swissprot	tr\|Q9ZR37\|DUS1_ARATH	4.00E-73	Dual specificity protein phosphatase 1
trEMBL	tr\|A0A072V237\|A0A072V237_MEDTR	2.00E-96	Dual specificity protein phosphatase {ECO:0000313\|EMBL:KEH32190.1}

Sequence

Transcript Sequence

>Glyur003407s00043764.1
CGAAAATTCATTCATAACATAAACAGGACGAAGACGACTGAAAAAAAGGGAAAAGATAAATAATAAATATATAAATTTGTGAGTTTCTCACTGCAGAATCATAAACGCTTTTTTGGTGAGTTATTCTCGGATCTCTGATCAGCTTTTTACCGGATTCTTACGCTGTAATTGTGATCATCACTTCTCAAATTATTTGTGCTGCATTGNATTCACATCGATTTTGTATAAATTTTGGCAAACTAATAAAAAGGATAGTATNTGCCCTGCAACCGATTATTTTAATATATTTTGTTATTGACGTAACCTAATTGATTGTGCGAGTATTTGATTTCCTGTTTGAAAGGGAGAATCAGAAATGGCGACCAACTCAGCAGCTATTGATCAATTTGATAAATCCATGAAGAAACANATAGCATCAATTTTGCGGGCTCTGGTTTATGTTAAATCCGTCAAAGAGGACAATACTCCTTGCAAGATCGACGAGGTGGNTCTCTTTTTGGGTTCGGTTGGTGCTGCATCAAACAAAGCTGCTTTGAAAAACTTGAACATTACTCACGTTTTGACCGTGGCTGGTAAACTGGCACCTNCACATCCTCGGGATTTCGTCTATAAAATTATAGACGTTGCTGACAGAGATGATACCAACTTAAAACAATACTTCAATGNGTGTTTTGATTTTATCGATGAAGCCAAAAGAAATGGCGGATTTGTTTTGGTTCATTGTTATGCTGGAAGATCANGGAGTGTGACTATCGTTGTGGCATATCTTATGAAGACTCGTGGAATGAGCTTATCTGAAGCTCTGCAACATGTACAGAGCAAACGACCACAAGCAGCTCCCAATTCTGGTTTCATTCGTCAGCTGGAAGACTTTGAAAAATCTCTTCAAGTTACAAATTGAAAGTAGGTTGTTTGAACATGCCGTTGATTGGATCTAGTTTATTCTTGGAAAGACATCGAAGTGTCCCCGTAGAGAACACGATGATGACTAGACAAGGAAGTGTAGATAAGTTTTATTATAACTATGGCAATCACATGAAGACCAGGCAGCATAAGTAGATATTGGCACTGCAACTTCATCCTCAGGTGCGGAAGTCCCAGTTAGAAGAACAATAAATTGGGCTATACATATAAGCCTATTTCTTTTTCATGAAATGTTGAATTCAATAAGCCTTTTCTCTTTCCAAGTGTTTTCCTAGTGATTAATTGCAAGAGAAGAAAAAGTAGAACTTAGTAGAGTATTTCTGTTCTATATTCAAGGGAATGAAGGGATGCACCNAAAAATACTTGGGTTTTTTGAATGGTTAGCACGAGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03407	3636	8237	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006470 protein dephosphorylation

GO:0016311 dephosphorylation

molecular_function

GO:0008138 protein tyrosine/serine/threonine phosphatase activity

GO:0016791 phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003407s00043764.1	PF00782.15	DSPc	46	175	3.30E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.122
SRR1783600	control	9.039
SRR1783602	moderate drought stress	6.026
SRR1811619	moderate drought stress	5.926

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.620
DRR006520	Root Summer glycyrrhizin high producing strain	19.121
DRR006521	Root Winter glycyrrhizin high producing strain	8.296
DRR006522	Root Winter glycyrrhizin high producing strain	7.666
DRR006523	Root Summer glycyrrhizin low producing strain	17.972
DRR006524	Root Summer glycyrrhizin low producing strain	17.742
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.868
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.029

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.996
SRR2868004	Drought Stress (root)	14.701
SRR2967015	Control (root)	13.283

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.583
SRR9715740	Leaf	6.738
SRR9715741	Leaf	8.629
SRR9715739	Root	1.373
SRR9715742	Root	8.309
SRR9715743	Root	6.214

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.412
SRR8749028	MeJA induced 9h	9.491
SRR8749029	MeJA induced 9h	4.901
SRR8749030	Uninduced	8.767
SRR8749031	Uninduced	6.359
SRR8749032	Uninduced	3.786

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.177
SRR8400027	Control - Root	18.229