Gene detail information of Glyur003405s00042630 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G69700.1 | 1.00E-64 | HVA22 homologue C |
| NR | KHN01204.1 | 6.74E-125 | HVA22-like protein c [Glycine soja] |
| Swissprot | tr|Q9S784|HA22C_ARATH | 7.00E-81 | HVA22-like protein c |
| trEMBL | tr|I1JE29|I1JE29_SOYBN | 6.00E-124 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G11770.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03405 | 7204 | 9466 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003405s00042630.1 | PF03134.14 | TB2_DP1_HVA22 | 19 | 106 | 4.80E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 182.914 |
| SRR1783600 | control | 183.208 |
| SRR1783602 | moderate drought stress | 35.302 |
| SRR1811619 | moderate drought stress | 35.264 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 27.935 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.807 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.123 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.161 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.918 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.732 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.747 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.978 |
| SRR2868004 | Drought Stress (root) | 7.615 |
| SRR2967015 | Control (root) | 9.156 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.164 |
| SRR9715740 | Leaf | 1.634 |
| SRR9715741 | Leaf | 1.437 |
| SRR9715739 | Root | 11.793 |
| SRR9715742 | Root | 5.450 |
| SRR9715743 | Root | 6.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 74.111 |
| SRR8749028 | MeJA induced 9h | 3.557 |
| SRR8749029 | MeJA induced 9h | 30.502 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 1.449 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 108.307 |
| SRR8400027 | Control - Root | 70.135 |