Gene detail information of Glyur003392s00033371 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G16420.1 | 4.00E-164 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| NR | XP_004492340.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g16420, mitochondrial-like [Cicer arietinum] |
| Swissprot | tr|Q9FFE3|PP388_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g16420, mitochondrial (Precursor) |
| trEMBL | tr|G7L4F1|G7L4F1_MEDTR | 0 | PPR containing plant-like protein, putative {ECO:0000313|EMBL:AES79285.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03392 | 2602 | 4329 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003392s00033371.1 | PF13812.1 | PPR_3 | 196 | 224 | 0.6 |
| Glyur003392s00033371.1 | PF12854.2 | PPR_1 | 227 | 259 | 1.20E-06 |
| Glyur003392s00033371.1 | PF13041.1 | PPR_2 | 265 | 314 | 2.30E-14 |
| Glyur003392s00033371.1 | PF12854.2 | PPR_1 | 331 | 363 | 3.30E-09 |
| Glyur003392s00033371.1 | PF01535.15 | PPR | 378 | 403 | 0.45 |
| Glyur003392s00033371.1 | PF01535.15 | PPR | 411 | 432 | 0.0021 |
| Glyur003392s00033371.1 | PF12854.2 | PPR_1 | 436 | 468 | 5.00E-07 |
| Glyur003392s00033371.1 | PF13041.1 | PPR_2 | 474 | 521 | 6.40E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.452 |
| SRR1783600 | control | 2.659 |
| SRR1783602 | moderate drought stress | 4.554 |
| SRR1811619 | moderate drought stress | 4.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.002 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.366 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.556 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.301 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.066 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.062 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.310 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.492 |
| SRR2868004 | Drought Stress (root) | 5.580 |
| SRR2967015 | Control (root) | 6.353 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.051 |
| SRR9715740 | Leaf | 3.127 |
| SRR9715741 | Leaf | 2.529 |
| SRR9715739 | Root | 6.462 |
| SRR9715742 | Root | 5.495 |
| SRR9715743 | Root | 6.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.183 |
| SRR8749028 | MeJA induced 9h | 3.753 |
| SRR8749029 | MeJA induced 9h | 4.062 |
| SRR8749030 | Uninduced | 1.345 |
| SRR8749031 | Uninduced | 2.008 |
| SRR8749032 | Uninduced | 1.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.602 |
| SRR8400027 | Control - Root | 12.143 |