Gene detail information of Glyur003388s00045935 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G68470.1 | 1.00E-156 | Exostosin family protein |
| NR | XP_004513612.1 | 0 | PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Cicer arietinum] |
| Swissprot | tr|Q8H038|KATAM_ORYSJ | 2.00E-110 | Xyloglucan galactosyltransferase KATAMARI1 homolog |
| trEMBL | tr|A0A072VGB2|A0A072VGB2_MEDTR | 0 | Xyloglucan galactosyltransferase KATAMARI-like protein {ECO:0000313|EMBL:KEH40817.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03388 | 4431 | 5900 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT47 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003388s00045935.1 | PF03016.10 | Exostosin | 98 | 429 | 8.80E-73 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.025 |
| SRR1783600 | control | 7.000 |
| SRR1783602 | moderate drought stress | 6.865 |
| SRR1811619 | moderate drought stress | 6.809 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.084 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.790 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.062 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.068 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.591 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.808 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.924 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.587 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 34.468 |
| SRR2868004 | Drought Stress (root) | 37.681 |
| SRR2967015 | Control (root) | 22.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.288 |
| SRR9715740 | Leaf | 4.639 |
| SRR9715741 | Leaf | 8.915 |
| SRR9715739 | Root | 42.388 |
| SRR9715742 | Root | 47.872 |
| SRR9715743 | Root | 47.446 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.744 |
| SRR8749028 | MeJA induced 9h | 9.924 |
| SRR8749029 | MeJA induced 9h | 5.689 |
| SRR8749030 | Uninduced | 16.946 |
| SRR8749031 | Uninduced | 1.944 |
| SRR8749032 | Uninduced | 3.463 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.353 |
| SRR8400027 | Control - Root | 12.624 |