Gene detail information of Glyur003387s00042420 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G13920.1 | 1.00E-20 | GRF zinc finger / Zinc knuckle protein |
| NR | XP_004493103.1 | 1.84E-157 | PREDICTED: uncharacterized protein LOC101489051 [Cicer arietinum] |
| trEMBL | tr|V7CVZ3|V7CVZ3_PHAVU | 3.00E-140 | Uncharacterized protein {ECO:0000313|EMBL:ESW33548.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03387 | 12954 | 18227 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003387s00042420.1 | PF00098.18 | zf-CCHC | 50 | 65 | 0.00031 |
| Glyur003387s00042420.1 | PF06839.7 | zf-GRF | 85 | 128 | 5.60E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.474 |
| SRR1783600 | control | 9.941 |
| SRR1783602 | moderate drought stress | 7.073 |
| SRR1811619 | moderate drought stress | 7.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.821 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.493 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.722 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.782 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.967 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.942 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.200 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.647 |
| SRR2868004 | Drought Stress (root) | 8.063 |
| SRR2967015 | Control (root) | 9.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.128 |
| SRR9715740 | Leaf | 0.714 |
| SRR9715741 | Leaf | 0.770 |
| SRR9715739 | Root | 0.501 |
| SRR9715742 | Root | 5.116 |
| SRR9715743 | Root | 4.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.493 |
| SRR8749028 | MeJA induced 9h | 3.263 |
| SRR8749029 | MeJA induced 9h | 2.473 |
| SRR8749030 | Uninduced | 0.388 |
| SRR8749031 | Uninduced | 0.071 |
| SRR8749032 | Uninduced | 0.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.048 |
| SRR8400027 | Control - Root | 4.924 |