Gene detail information of Glyur003372s00040982 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60460.1 | 6.00E-20 | Preprotein translocase Sec, Sec61-beta subunit protein |
| NR | XP_007132194.1 | 7.31E-47 | hypothetical protein PHAVU_011G073900g [Phaseolus vulgaris] |
| Swissprot | tr|P38389|SC61B_ARATH | 3.00E-21 | Protein transport protein Sec61 subunit beta |
| trEMBL | tr|V7AH75|V7AH75_PHAVU | 3.00E-47 | Uncharacterized protein {ECO:0000313|EMBL:ESW04188.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03372 | 21365 | 21688 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003372s00040982.1 | PF03911.11 | Sec61_beta | 57 | 96 | 4.80E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 158.667 |
| SRR1783600 | control | 163.094 |
| SRR1783602 | moderate drought stress | 92.874 |
| SRR1811619 | moderate drought stress | 93.461 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 64.609 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 62.034 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 47.633 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 44.838 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 50.627 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 51.091 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 40.755 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 41.587 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 95.157 |
| SRR2868004 | Drought Stress (root) | 74.496 |
| SRR2967015 | Control (root) | 72.061 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 52.949 |
| SRR9715740 | Leaf | 59.020 |
| SRR9715741 | Leaf | 51.434 |
| SRR9715739 | Root | 150.335 |
| SRR9715742 | Root | 71.305 |
| SRR9715743 | Root | 81.587 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 305.945 |
| SRR8749028 | MeJA induced 9h | 118.890 |
| SRR8749029 | MeJA induced 9h | 153.215 |
| SRR8749030 | Uninduced | 67.130 |
| SRR8749031 | Uninduced | 36.724 |
| SRR8749032 | Uninduced | 70.738 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 110.030 |
| SRR8400027 | Control - Root | 105.734 |