Gene detail information of Glyur003372s00040981.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G45260.1 | 6.00E-77 | C2H2-like zinc finger protein |
| NR | XP_007132196.1 | 5.53E-163 | hypothetical protein PHAVU_011G074100g [Phaseolus vulgaris] |
| Swissprot | tr|Q944L3|IDD9_ARATH | 6.00E-101 | Protein indeterminate-domain 9 {ECO:0000303|PubMed:16784536} |
| trEMBL | tr|V7AG15|V7AG15_PHAVU | 2.00E-163 | Uncharacterized protein {ECO:0000313|EMBL:ESW04190.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03372 | 9439 | 11343 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.629 |
| SRR1783600 | control | 28.317 |
| SRR1783602 | moderate drought stress | 22.735 |
| SRR1811619 | moderate drought stress | 22.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.211 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.380 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.812 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.240 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 38.575 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 37.859 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.931 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.822 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.209 |
| SRR2868004 | Drought Stress (root) | 7.909 |
| SRR2967015 | Control (root) | 11.316 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.641 |
| SRR9715740 | Leaf | 3.508 |
| SRR9715741 | Leaf | 3.053 |
| SRR9715739 | Root | 4.756 |
| SRR9715742 | Root | 13.634 |
| SRR9715743 | Root | 13.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.692 |
| SRR8749028 | MeJA induced 9h | 9.009 |
| SRR8749029 | MeJA induced 9h | 9.832 |
| SRR8749030 | Uninduced | 7.573 |
| SRR8749031 | Uninduced | 23.727 |
| SRR8749032 | Uninduced | 23.526 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.478 |
| SRR8400027 | Control - Root | 17.282 |