Gene detail information of Glyur003372s00040980 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60490.1 | 2.00E-36 | FASCICLIN-like arabinogalactan-protein 12 |
| NR | XP_003539728.1 | 1.00E-141 | PREDICTED: fasciclin-like arabinogalactan protein 12-like isoform 1 [Glycine max] |
| Swissprot | tr|Q8LEE9|FLA12_ARATH | 2.00E-42 | Fasciclin-like arabinogalactan protein 12 (Precursor) |
| trEMBL | tr|V7AJG6|V7AJG6_PHAVU | 3.00E-135 | Uncharacterized protein {ECO:0000313|EMBL:ESW04231.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03372 | 6933 | 7847 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003372s00040980.1 | PF02469.17 | Fasciclin | 93 | 227 | 1.30E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 149.526 |
| SRR1783600 | control | 154.444 |
| SRR1783602 | moderate drought stress | 187.906 |
| SRR1811619 | moderate drought stress | 187.730 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.531 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.361 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.315 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.449 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.315 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.039 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 92.722 |
| SRR2868004 | Drought Stress (root) | 138.702 |
| SRR2967015 | Control (root) | 86.902 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.196 |
| SRR9715740 | Leaf | 3.864 |
| SRR9715741 | Leaf | 0.512 |
| SRR9715739 | Root | 52.755 |
| SRR9715742 | Root | 191.671 |
| SRR9715743 | Root | 168.815 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.256 |
| SRR8749028 | MeJA induced 9h | 0.766 |
| SRR8749029 | MeJA induced 9h | 0.181 |
| SRR8749030 | Uninduced | 0.296 |
| SRR8749031 | Uninduced | 1.480 |
| SRR8749032 | Uninduced | 1.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 378.018 |
| SRR8400027 | Control - Root | 497.601 |