Gene detail information of Glyur003372s00040979 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60490.1 | 9.00E-41 | FASCICLIN-like arabinogalactan-protein 12 |
| NR | XP_007132231.1 | 1.02E-136 | hypothetical protein PHAVU_011G077100g [Phaseolus vulgaris] |
| COG | YP_003819703.1 | 2.00E-07 | beta-Ig-H3/fasciclin [Brevundimonas subvibrioides ATCC 15264] |
| Swissprot | tr|Q8LEJ6|FLA11_ARATH | 4.00E-49 | Fasciclin-like arabinogalactan protein 11 (Precursor) |
| trEMBL | tr|V7AG46|V7AG46_PHAVU | 4.00E-137 | Uncharacterized protein {ECO:0000313|EMBL:ESW04225.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03372 | 4499 | 5362 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003372s00040979.1 | PF02469.17 | Fasciclin | 80 | 214 | 6.20E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 128.552 |
| SRR1783600 | control | 128.364 |
| SRR1783602 | moderate drought stress | 120.853 |
| SRR1811619 | moderate drought stress | 120.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.840 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.684 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.848 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.882 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.665 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.618 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.823 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.858 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 65.788 |
| SRR2868004 | Drought Stress (root) | 100.581 |
| SRR2967015 | Control (root) | 80.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.665 |
| SRR9715740 | Leaf | 2.727 |
| SRR9715741 | Leaf | 0.340 |
| SRR9715739 | Root | 37.689 |
| SRR9715742 | Root | 149.419 |
| SRR9715743 | Root | 117.663 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.470 |
| SRR8749028 | MeJA induced 9h | 0.824 |
| SRR8749029 | MeJA induced 9h | 2.842 |
| SRR8749030 | Uninduced | 7.480 |
| SRR8749031 | Uninduced | 10.763 |
| SRR8749032 | Uninduced | 19.779 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 217.573 |
| SRR8400027 | Control - Root | 351.753 |