Gene detail

Gene detail information of Glyur003371s00038969

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G16490.1	4.00E-63	IQ-domain 26
NR	XP_006583044.1	0	PREDICTED: protein IQ-DOMAIN 14-like [Glycine max]
Swissprot	tr\|Q8L4D8\|IQD31_ARATH	6.00E-15	Protein IQ-DOMAIN 31
trEMBL	tr\|I1KGH8\|I1KGH8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G01760.1}

Sequence

Transcript Sequence

>Glyur003371s00038969.1
AAAAAAGTTGTGGGTGAGAAAGTTATGGGCAAAGCTAGCAGGTGGTTGAAGGGGTTANTGGGGATGAAGAAGGAGAAGGACCACCACCACAGTGACAATTCAGGCTTATTGGCACCTGACAAGAAGGAGAAGAAAAGGTGGAGTTTTAGTACTAAGCAGCAAGGGAAGGATGTGGCAGTGGAACCTCACATTAACAGCAATACTACTCCCACTTCCACTGACAATAACAACAATGCCTGGCTCAGATCCTATATTGCTGAGACAGAGAACCAGCAGAACAAGCATGCAATTGCTGTGGCAGCTGCCACAGCCGCCGCNGCTGATGCCGCGGTGGCCGCCGCACAGGCTGCCGTGGCGGTTGTGAGGCTGACAAGCCAGGGGAGAGGGACATTGTTCAGTGGGAGTAGGGAGAAGTGGGCTGCAGTGAAGATCCAAACTTTCTTCAGGGGTTATTTGGCACGGAAGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATACAGGCTCTTGTTAGAGGCTATCTAGTTAGAAAGAGGGCTGCTGCAACTCTTCACAGTATGCAAGCTCTAATTAGAGCTCAGGCTGCTGTCCGAACACAGAGAGCTCGCCGTTCCATGAGCAAAGAAAATAGATTTCTACCTGAAGAACGATTTGATGAAACAAGGAGTGAATTCCACAGCAAAAGGCTACCAACATCTTATGAGACATCATTAAATGGATTTGATGAAAGCCCCAAGATTGTTGAAATTGACACTTACAAGACTCGATCAAGATCTAGGCGCTTTATCACATCTACAATGTCTGAATGTGGNGAAGACTTGCCATGCCATGCAATCTCATCCCCTCTCCGTTGTCCAGTGCCAGGTCGAATCTCAGTTCCTGCTGATTGCAGACACCTTCAAGACTTTGATTGGTACTACAATGTTGATGAGTGTAGGNTCTCCACAGCACATAGCACCCCACGTTTCAACAACAACAACAACTTTGTGCGTCCTTATAATAATGCTCCAGCTACACCAGCAAAGAGTGTTTGTGGGGACACTTTCTTTAGATCTTACTCCAATTTCCCTAACTACATGTCCAACACTCAGTCCTTTAAGGCAAAACTNAGGTCTCACAGTGCCCCAAAGCAAAGACCTGAACCAAAGAAGAGGCTTTCACTCAATGAAATGATGGCTGCAAGGAATAGCATCAGTGGTGTTAGAATGCAAAGGCCACCCAATTTCCAGACTCAAGAGTCATGGAATTTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03371	12172	14404	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003371s00038969.1	PF00612.22	IQ	131	150	4.00E-06
Glyur003371s00038969.1	PF00612.22	IQ	156	170	0.00075
Glyur003371s00038969.1	PF13178.1	DUF4005	311	391	2.60E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.531
SRR1783600	control	1.645
SRR1783602	moderate drought stress	1.899
SRR1811619	moderate drought stress	1.763

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.039
DRR006520	Root Summer glycyrrhizin high producing strain	1.969
DRR006521	Root Winter glycyrrhizin high producing strain	0.742
DRR006522	Root Winter glycyrrhizin high producing strain	0.645
DRR006523	Root Summer glycyrrhizin low producing strain	0.836
DRR006524	Root Summer glycyrrhizin low producing strain	0.860
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.689
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.740

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.393
SRR2868004	Drought Stress (root)	4.484
SRR2967015	Control (root)	5.942

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.562
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.726
SRR9715739	Root	0.258
SRR9715742	Root	0.405
SRR9715743	Root	0.562

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.845
SRR8749028	MeJA induced 9h	1.386
SRR8749029	MeJA induced 9h	0.668
SRR8749030	Uninduced	0.194
SRR8749031	Uninduced	0.017
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.499
SRR8400027	Control - Root	2.379