Gene detail

Gene detail information of Glyur003371s00038967

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25150.1	2.00E-43	HAD superfamily, subfamily IIIB acid phosphatase
NR	AFK40440.1	1.68E-130	unknown [Lotus japonicus]
COG	YP_006421373.1	4.00E-23	putative secreted acid phosphatase [Terriglobus roseus DSM 18391]
Swissprot	tr\|P15490\|VSPA_SOYBN	3.00E-78	Stem 28 kDa glycoprotein (Precursor)
trEMBL	tr\|I3SJJ8\|I3SJJ8_LOTJA	6.00E-131	Uncharacterized protein {ECO:0000313\|EMBL:AFK40440.1}

Sequence

Transcript Sequence

>Glyur003371s00038967.1
ATGAAGAATACACTTGTAGTTTTTTTCGTCGTTGCTGCTACACTGGTAGCAACATGCCATGGTCATGGGTCATCCTCAGAGCAACATGACCATGGCGCAACCTACAAGATATTCCCTCTCCGAATGAAAACTGGGTCAGGTGGCCNCTACATTCCTGACGTGTCGTGTGCTAGTTGGAGGCTTGGTGTGGAATCACACAACGTCATTAACTGGAAAACCGTTCCACTAGAGTGTGAAGGGTATATTGGGAACTATATCCTTGGTGACCAATATAGATCTGATTCTAAAACCGTTTGCCGCGAAGGTTATTTGTATACCAAGAGTCTCAATCTAGTTGCCGATGGCAAAGCCATTTGGGTGGTGGAACCATACAATGAGACGTTGTTTAATGCATGGGTTGAGCGTGGCATAGCACCAGCACTGCCAGAGTCTCTTAAACTGTACAAAAAACTGTTGTCTCTGGGCATCAAGATTGTATTCATAACGGGAAGACCACTGACGCAAAAGGAAATCACGGCTAAGAACTTGAAGCAAGCTGGGTTCTACACATGGGAAAAGTTAATTTGCAAGGATCCATCAGTATATTCTGGTAAAACAGCAGTTGTATACAAATCAGCAGAGAGGAAGAAGCTGGAGGAAGAAGGGTACAAAATCATAGGGAACATAGGAGACCAATGGAGTGATATCCTGGGAACCAACACAGGCAATAGGACTTTCAAGCTGCCCGATCCTATGTACTACATTAGCTAATTTCTCCAATTAAGCTAAAGCTCAATCTAGCTAATTAACTACCGAATGGATCCGTTTTTTTCTATGTGAACTGAAATATGTATGTGACACATTCCAAGGTAGCTTTTATGTATTTTCTCAAATAAAAATTATGGAGACAGTACTACTACTTTAACAACCACCAACGCCCATCGAGTCACAAAAGAGATAGTTTTCTCTTTTTTGGTTTTAATAATTATGTCCATGTCAGAATTGGTCATTTAAGGATCAACATTAAGTGAAACTGAACTAGATATAGCAAAAATATCCGTACTTATGAGTATCCACGGATAAAACTCGTTATGGATACGGGGTGGTACCTTAATGGGTACTCGCATGTAAATTAAACAGGTATTTGAGGTACCCACGAATAAATAGAGACGGGACAGGTAGTGAGGTACCTGTACTCGCGGGTAGTGAGGTAACCGGTACCCATTAGTAAAATTACAACAAATTTCCTTTTATTTATATATATACCTAAAATTCTAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03371	1445	4365	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003993 acid phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003371s00038967.1	PF03767.9	Acid_phosphat_B	51	121	2.90E-10
Glyur003371s00038967.1	PF03767.9	Acid_phosphat_B	122	248	4.90E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	355.745
SRR1783600	control	361.673
SRR1783602	moderate drought stress	110.645
SRR1811619	moderate drought stress	112.286

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	254.679
DRR006520	Root Summer glycyrrhizin high producing strain	256.874
DRR006521	Root Winter glycyrrhizin high producing strain	0.088
DRR006522	Root Winter glycyrrhizin high producing strain	0.086
DRR006523	Root Summer glycyrrhizin low producing strain	16.019
DRR006524	Root Summer glycyrrhizin low producing strain	14.908
DRR006525	Leaf Summer glycyrrhizin high producing strain	101.796
DRR006526	Leaf Summer glycyrrhizin high producing strain	101.581

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1023.018
SRR2868004	Drought Stress (root)	384.533
SRR2967015	Control (root)	377.482

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	421.380
SRR9715740	Leaf	206.387
SRR9715741	Leaf	146.118
SRR9715739	Root	41.026
SRR9715742	Root	164.344
SRR9715743	Root	138.276

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.101
SRR8749028	MeJA induced 9h	0.089
SRR8749029	MeJA induced 9h	0.053
SRR8749030	Uninduced	0.308
SRR8749031	Uninduced	0.049
SRR8749032	Uninduced	0.203

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	402.423
SRR8400027	Control - Root	285.655