Gene detail

Gene detail information of Glyur003367s00041240

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	9.00E-73	disease resistance protein (TIR-NBS-LRR class), putative
NR	XP_003526343.1	0	PREDICTED: TMV resistance protein N-like [Glycine max]
COG	YP_001869272.1	3.00E-15	Miro domain-containing protein [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q40392\|TMVRN_NICGU	2.00E-89	TMV resistance protein N
trEMBL	tr\|K7KYE4\|K7KYE4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G46665.1}

Sequence

Transcript Sequence

>Glyur003367s00041240.1
AATAATCATAACAACAAGAGATAAGCATTTGCTAGCTGCTCATCAGGTCGACAAAACATATGAAGTGAAGAAATTGAACCATGGTGAAGCTTTTAAATTGTTCACTTGGAATGCTTTCAAAAGAAAAGCACCTGATGCAGGCTATATGGAGATTTCAAACCGTGTGGTGCTCTATGCNGAGGGGCTTCCATTGGCATTGAAAGTAATGGGTTCTAATTTGTTTGGTAAAACAGTGGAGGAATGGAAATCTGCACTAGCCAAGTATGAAAAGATTCCTAATAAAGAGGTTCAGAATGTACTTAGAGTAACCTATGATAATCTTGAAGAGAATGAGAAGGAGATTTTCTTGGACATAGCATGTTTCTTCAAGGGGGAGACAATGGAATATGTTGAAAAGACACTGCAAGCTTGTGGTTTCTATCCAAAGTTTGGTATTGGTGTACTCATTGATAGGTCTCTTGTAAGTACTGATGAATATAACAGATTGAGAATGCATGATCTGATACAAGACATGGGTAGAGAAATTGTTAGAGAAGATTCCCCTTTAGAACCCGGAAAGCGGAGTAGACTATGGTATCACGAAGATGTCTTTGAAGTACTAACCGAAAACACGGGGACTTATAGAGTTCAAGGCATGATGGTGGACCTCCCTGATCGATACATGGTGCACTTGAAAGATGATTCCTTCAAAAGGATGAAAAATCTTAAAATTCTTATAGTTCGACATGGACACTTTTATGGAAGCCCCCAACAACTTCCAAACAATTTAAGGTTGCTTGACTGGATGGAATATCCTTCATCATCTTTACCATCTACTTTTTATCCAAAGAAACTCGTTATCCTCAACTTGTCGCACAGTCGTTTTACAATGCAAGAGCCATTCAAGTATTTGGATTCTTTGACTTCTATGGATTTGAGTCACTGTGAATTCTTAACAAAGCTACCAGACATTTCTGGAGTCCCTAACTTAACAGAACTAAATCTTGACTATTGTAAAAATCTAGAAGAGGTTCATGACTCTGTTGGATTCCTTGATAAACTCATTGAGTTGAGGGCTTCTGGATGCACCAAGCTTAAGGTTTTTCCACCTACCATCAGGTTGGCATCATTGAAAAGTCTTATTCTTACTTGGTGCTCAAGTCTTCAAAGTTTCCCTGCTATTTTGGGGGAAATGGAAAATCTCATATCTATTTCTATTGAATCATCTGGTATTGAAGAATTGCCTCCTTCCATTGGAAATCTTGTTGGGCTTCAAGAACTAAGCATGACATCTTGCTTGAGTCTCAAGGAACTTCCTGATAACATTTACATGTTGCATAATCTTAGAAGCCTCGATATCGAAGGCTGTCCATCTCTTCGAAGCTTTTTGTCGAAATTGAGAGCATTGGGACAATCTACACCTACCTTTGGTAACATTCAGTCACTGAACCTAGAGAACTGTGGTCTTATAGATGAAGATCTTCCCATAATGTTCAGCTGTTTCCCAAAGTTAGCATCCTTAGTCCTTTCAGGAAATAATTTTGTAACTCTTCCAAGCTGCATACAACAATTTCATGCCTTGCAATTACTTTCCTTAGACAACTGCAAACTTCTCCAAGAAATCCCAGGCATTCCTCCCAATCTGCAATTCATTAATACGACAAACTGCATATCATTGACTGAAGAGTCATCAAACTTGTTGCTAAGCCAGCAAACTTTTGAGGCATGTGAGTTACACGTTATCGTCCCAGGAACAAGGATTCCAGAATGGTTCGACCACCTCACCGAAGGAGAATATATGACCTTTTGGGTACACAAAAAGTTTCCAGAACTTATTATATGCTTTGTTCTTGCAATAGAGGGCGAAATGACGAAGATTTTCAATTGTGAAATCCGCTTCTGTATAAACGGCGATGAATTCTACGAATTGGAAGTGCCAATATGCTTTCAAGAAATGGTGACAGATCATGTGTGGCTGTATGACACGCGAATTCATCCGTCCATTCAGCAGCATGATCTTGATTCATATCTAGTCGATGATTGGAACCAGGTTGAGATTTCATGTGAGAAGATAGGTGGGGCACCAAATGTGACTGTGAGCTGGTGTGGAGTTCATGTGTGTAAGCAAGAAGCTAACATGATGAAGGATATCCTATTTGAAGACCCTGAGCTTGATTTAGATTCAGGAAGAGAATTTGAGAAGACTGATGGTGATTTGGTTACAAACTGTAAAGAAAGCATAGAGTCAATTGAAGATGATAACTGCTACAATTTCAAGAACTTGGAAGGTTGTGAGACACCGGATAGGCAAGTAGAGAAGTGGTGGAAAACAAGTAAACAAGAAGAAAATAGTGTGGATGCATGCCACACTGACATGGATAAGATTTTATTGCATCCCAAAACATTGGATAGTGTTACTAAAGATTCAATGGCTTCTGTTTGTTTTGGAGGAACCGGTAGTGTCAAAGTTGTAGAGTGTGGATCAAACATAGTAGTAGCTGCTGATCCTCCAGCAAAAGCTCAAGGAAAATCCCAAGTCACAAGTTTCATGCAGACACCAAATGCTCAAACACCAAGTGCTAGTGCTCCTCTACCTCAAAATACAAACTCGTTCATGGTGCTTCCAACTAGTACTACCATTGACTTTTCAAGAAACCAAACCAACTTAAGCATAGATGATGAAGACATGGAAGCATTTTATGCCAATTTGGATGCTGAGACCTCAGTTCTTTCACTTCCCAATGACAACAAAGTGGTTTCTGAATTGGCCAACAAAACAATGCCAAGTGAAAAGACCCAGAAAGCTTTGAAGACACTTCAAGACTTTCTCACCAAAGACTTTTCTGTTCTATTGGGGCCTAATGAGTACATTACCATGAAATCAACCTTAGACTACCTCACCAATTTACCTGCGGAAGATGGAATATCAGTGGAAATAAGATCATTGATAATACAAGTTTCAAGACAGTTCAATTGTTGGAGCTTGGATTACACACATGAAAGCAAGAAAATAGAGTCTACAACAACAAAATTGTTGAAAGCTGGTGAACTAGAAGAGGGTCTTGAAGCTAACAAGACCCTTTTCAGGGAAATCTTGTGCTTGGAAAATGAGTTGTGCAATGAGTTGGCATATTTGGAGGAAAGGAAGAAGGAGCTAGAAGAACANATAANTGCTGTTAGAGCTAACATATGTGCTTCACAAGCAGCCAGGGACACGGTTTCTCATACAAGGAGAGAAATCTTTGGTGAAGCAAAGATTATGAAAGCTCAAAGAGATGAGTTAAGGGAACAAGTGCCACATTTGAGAGATGAGCAAGAATTGGCTAAGAAAATTCAGGCAAGTATCAGAGCTGAATGGTCAAAGCTAGGAGAAAAATTTAACAACCGTTTTAAGGCAAATAATGTNACAAAATAG

Protein Sequence

>Glyur003367s00041240.1
MEISNRVVLYAEGLPLALKVMGSNLFGKTVEEWKSALAKYEKIPNKEVQNVLRVTYDNLEENEKEIFLDIACFFKGETMEYVEKTLQACGFYPKFGIGVLIDRSLVSTDEYNRLRMHDLIQDMGREIVREDSPLEPGKRSRLWYHEDVFEVLTENTGTYRVQGMMVDLPDRYMVHLKDDSFKRMKNLKILIVRHGHFYGSPQQLPNNLRLLDWMEYPSSSLPSTFYPKKLVILNLSHSRFTMQEPFKYLDSLTSMDLSHCEFLTKLPDISGVPNLTELNLDYCKNLEEVHDSVGFLDKLIELRASGCTKLKVFPPTIRLASLKSLILTWCSSLQSFPAILGEMENLISISIESSGIEELPPSIGNLVGLQELSMTSCLSLKELPDNIYMLHNLRSLDIEGCPSLRSFLSKLRALGQSTPTFGNIQSLNLENCGLIDEDLPIMFSCFPKLASLVLSGNNFVTLPSCIQQFHALQLLSLDNCKLLQEIPGIPPNLQFINTTNCISLTEESSNLLLSQQTFEACELHVIVPGTRIPEWFDHLTEGEYMTFWVHKKFPELIICFVLAIEGEMTKIFNCEIRFCINGDEFYELEVPICFQEMVTDHVWLYDTRIHPSIQQHDLDSYLVDDWNQVEISCEKIGGAPNVTVSWCGVHVCKQEANMMKDILFEDPELDLDSGREFEKTDGDLVTNCKESIESIEDDNCYNFKNLEGCETPDRQVEKWWKTSKQEENSVDACHTDMDKILLHPKTLDSVTKDSMASVCFGGTGSVKVVECGSNIVVAADPPAKAQGKSQVTSFMQTPNAQTPSASAPLPQNTNSFMVLPTSTTIDFSRNQTNLSIDDEDMEAFYANLDAETSVLSLPNDNKVVSELANKTMPSEKTQKALKTLQDFLTKDFSVLLGPNEYITMKSTLDYLTNLPAEDGISVEIRSLIIQVSRQFNCWSLDYTHESKKIESTTTKLLKAGELEEGLEANKTLFREILCLENELCNELAYLEERKKELEEXIXAVRANICASQAARDTVSHTRREIFGEAKIMKAQRDELREQVPHLRDEQELAKKIQASIRAEWSKLGEKFNNRFKANNVTK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03367	4605	8817	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003367s00041240.1	PF00931.17	NB-ARC	2	87	8.10E-11
Glyur003367s00041240.1	PF00560.28	LRR_1	251	270	1

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.040
SRR1783600	control	0.902
SRR1783602	moderate drought stress	1.300
SRR1811619	moderate drought stress	1.372

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.684
DRR006520	Root Summer glycyrrhizin high producing strain	2.484
DRR006521	Root Winter glycyrrhizin high producing strain	0.533
DRR006522	Root Winter glycyrrhizin high producing strain	0.533
DRR006523	Root Summer glycyrrhizin low producing strain	2.468
DRR006524	Root Summer glycyrrhizin low producing strain	2.590
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.704
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.743

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.464
SRR2868004	Drought Stress (root)	4.736
SRR2967015	Control (root)	3.402

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.224
SRR9715740	Leaf	2.241
SRR9715741	Leaf	0.368
SRR9715739	Root	0.204
SRR9715742	Root	0.881
SRR9715743	Root	0.721

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.965
SRR8749028	MeJA induced 9h	2.900
SRR8749029	MeJA induced 9h	0.981
SRR8749030	Uninduced	2.191
SRR8749031	Uninduced	0.338
SRR8749032	Uninduced	0.358

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.158
SRR8400027	Control - Root	3.720