Gene detail

Gene detail information of Glyur003364s00042093

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14460.1	2.00E-34	LRR and NB-ARC domains-containing disease resistance protein
NR	XP_004485725.1	0	PREDICTED: putative disease resistance RPP13-like protein 1-like isoform X2 [Cicer arietinum]
Swissprot	tr\|Q9LRR5\|DRL21_ARATH	5.00E-39	Putative disease resistance protein At3g14460
trEMBL	tr\|V5TIM1\|V5TIM1_CICAR	0	NBS-LRR protein {ECO:0000313\|EMBL:AHB64352.1}

Sequence

Transcript Sequence

>Glyur003364s00042093.1
ATGATTCGGCTATCTCTATCTTGTTGTCAGAATTGTTGTCTCCTTCCATGTCTTGGACAGTTACACTCTCTCCAGTACTTGACTATCCGTGGATTGAATATGCTGCAAGCTATTGGATCTGAATTTTTGACGAATGGTGATTCTTTTTCAGGGACACCCTTTCCCTCCCTTGTATTGTTGCAGTTTGATGAAATGTCATGTTGGGAGGTGTGGAATCATCCCCTTGAGTTAGGTGCTTTTCCTGTACTAAAGTTCCTTGTGATACGTGGTTGTCCCAGATTACTGGGAGATTTGCCAGCTCATCTTCCTGCTCTAGAAACAATTTGTATTGTATGGTGCGACCAACTTGCTTCTTCTCTCCCAAGGGCTCCTTCCATCCGCGAGTTAGTGATAATTACTAGCAGTAAAGTATCCTTACCATCAGAGCTACCGCTCTCTATGGAAAAGATATCTATTCAAGGAAGACAGGTGACAGAGCTCATACCTGAAGACATCGTTGTCACCCTACCAACTTCTCTTCGAACTTTGAAAATAAGAGATTGTTCGTCTGCCATATCATTTCCGGGAGATTGTTTACCCGCTTCCTTGAAGGATTTGTGTATTGTAGATTGTAGAAAACTAGATCTCCCAAAGCAAAACCACCAGCACAAGTCACTTCAGTCATTGCGCATAGAAAACAGTTGTGATTCTCTCATGACCCTCCCACTGGAGATGCTTCCGAATCTCTATCATGTCAACATCAAAAACTGTGAAAATCTAGAATCTCTTTCGGGGTCAAAGATTCTTCAAAGTCTCAATTATTTTTCCATTGCGGACTGCCCCAATTTTGTATCGTTCCCAAGAGAAGGATTGTCCGCACCTAACTTGACATCATTCTGTGTCTCCAACTGTGTTAGTTTAAGGTCATTGCCTTGTCACGCAAATAGTCTTCTCCCAAAGTTAGAAGAAGTGACGATAGATGGTTGCCCCAAAATTGAGTCATTTCCTGAAGGGGGTATGCCGCGGAGCTTGAGATCACTTATCATAAATTGCGAGAAATTACTAAGGAGCCCATCCCTAACTTTGATGGACATGGTTACCCGTCTTTCCATTGGAGATGTATGTGATAATGTCGAGTCCTTCCCCAAGGAGGGTTTTGCATTACTGCCTCCCTCCCTTGTCTCCCTGCGCCTAAATGATTTTTTAAGTTTGCACACGTTAGGATGCACGGGGCTTCTCCACCTCACCTCCCTCCAACAATTAACGATAGAATATTGTCCCAAGCTGGAGAATATTGCGGGAGAAAGGATGCCTACTTCTCTAGTAAAACTTGAAATAAGTGGATGTCCTCTACTTGAAGAACGGTGCTGCATGAAAGACCAACAAATCTGGCCCAAAATTTCCCACATTCGAGGCATTATGATCAACTACAGATGGATTTCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03364	24305	25729	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.111
SRR1783600	control	9.317
SRR1783602	moderate drought stress	14.961
SRR1811619	moderate drought stress	14.368

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.680
DRR006520	Root Summer glycyrrhizin high producing strain	0.694
DRR006521	Root Winter glycyrrhizin high producing strain	5.247
DRR006522	Root Winter glycyrrhizin high producing strain	4.713
DRR006523	Root Summer glycyrrhizin low producing strain	1.631
DRR006524	Root Summer glycyrrhizin low producing strain	0.984
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.033
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.065

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.349
SRR2868004	Drought Stress (root)	8.151
SRR2967015	Control (root)	4.568

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.213
SRR9715740	Leaf	0.453
SRR9715741	Leaf	2.160
SRR9715739	Root	0.897
SRR9715742	Root	3.084
SRR9715743	Root	2.673

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.574
SRR8749028	MeJA induced 9h	3.869
SRR8749029	MeJA induced 9h	2.806
SRR8749030	Uninduced	1.649
SRR8749031	Uninduced	1.652
SRR8749032	Uninduced	1.089

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.302
SRR8400027	Control - Root	4.639