Gene detail information of Glyur003340s00043096 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G35615.1 | 4.00E-19 | Eukaryotic aspartyl protease family protein |
| NR | XP_002457242.1 | 1.22E-22 | hypothetical protein SORBIDRAFT_03g003930 [Sorghum bicolor] |
| Swissprot | tr|Q9LZL3|PCS1L_ARATH | 1.00E-18 | Aspartic proteinase PCS1 (Precursor) |
| trEMBL | tr|K7UQS7|K7UQS7_MAIZE | 2.00E-25 | Uncharacterized protein {ECO:0000313|EMBL:AFW80194.1, ECO:0000313|EnsemblPlants:GRMZM2G144464_P01} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03340 | 17762 | 20484 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003340s00043096.1 | PF14543.1 | TAXi_N | 103 | 275 | 4.10E-19 |
| Glyur003340s00043096.1 | PF14541.1 | TAXi_C | 302 | 465 | 2.00E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.045 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.021 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.033 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.032 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.016 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.592 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.007 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.078 |
| SRR2868004 | Drought Stress (root) | 1.040 |
| SRR2967015 | Control (root) | 0.245 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.423 |
| SRR9715740 | Leaf | 0.371 |
| SRR9715741 | Leaf | 0.207 |
| SRR9715739 | Root | 0.120 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.049 |
| SRR8400027 | Control - Root | 0.011 |