Gene detail information of Glyur003338s00043594 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G27100.1 | 4.00E-90 | glutamate receptor 2.1 |
| NR | KHN27605.1 | 0 | Glutamate receptor 2.7 [Glycine soja] |
| COG | YP_007158675.1 | 7.00E-14 | amino acid ABC transporter substrate-binding protein, PAAT family [Anabaena cylindrica PCC 7122] |
| Swissprot | tr|O04660|GLR21_ARATH | 3.00E-106 | Glutamate receptor 2.1 (Precursor) |
| trEMBL | tr|I1KDN7|I1KDN7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G34880.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03338 | 7856 | 12542 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003338s00043594.1 | PF01094.23 | ANF_receptor | 61 | 367 | 1.40E-42 |
| Glyur003338s00043594.1 | PF00060.21 | Lig_chan | 531 | 776 | 4.10E-26 |
| Glyur003338s00043594.1 | PF00497.15 | SBP_bac_3 | 604 | 739 | 2.60E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.042 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.042 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.639 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.626 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.922 |
| SRR2868004 | Drought Stress (root) | 7.145 |
| SRR2967015 | Control (root) | 2.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.403 |
| SRR9715740 | Leaf | 13.984 |
| SRR9715741 | Leaf | 6.855 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.024 |
| SRR9715743 | Root | 0.048 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.107 |
| SRR8749028 | MeJA induced 9h | 0.133 |
| SRR8749029 | MeJA induced 9h | 0.024 |
| SRR8749030 | Uninduced | 0.308 |
| SRR8749031 | Uninduced | 0.044 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.179 |
| SRR8400027 | Control - Root | 0.308 |