Gene detail

Gene detail information of Glyur003331s00041636.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G44820.1	1.00E-175	Peptidase M20/M25/M40 family protein
NR	XP_003543794.1	0	PREDICTED: aminoacylase-1-like [Glycine max]
COG	YP_002433592.1	3.00E-26	peptidase M20 [Desulfatibacillum alkenivorans AK-01]
Swissprot	tr\|Q9C5C4\|ARGE_ARATH	6.00E-08	Acetylornithine deacetylase
trEMBL	tr\|I1LW56\|I1LW56_SOYBN	0	Aminoacylase-1 {ECO:0000256\|PIRNR:PIRNR036696}

Sequence

Transcript Sequence

>Glyur003331s00041636.2
CCCAACCAAACACAACTCAAGGGGCGTGGAATGAAAGCCGAGAGCTCTGAGGTGTGAAGCTGAGTTGACTGGTGTCTTCTTCAGAAATGACCATGGCGAGACCAACCCCAAAAACACAGTGCTTCTCACTCATATACCTCACTCTCATCCTTTCATCCACCCTCCTTTCCGTCTCAGCAACAACCCACGAACATGAAGACGACGTCGTCGACGACCCAATCACCCGCTTCCAACGGTACCTCCGAATCAACACGGCACACCCAAACCCAGACTACTCCTCAGCCGTATCGTACCTCATCTCCCAGGCAGACTCAATCGGCCTCCTCCACAGAACCCTAGAGTTCTCCCAAGGGAAACCCCTCCTTCTCCTCACATGGCCTGGGTCCTACCCTTCCCTCCCTTCCATCCTCCTCAACTCCCACCTCGACTCCGTCCCCGCCGAACCCTCCAAGTGGCTCCACCCTCCCTTCTCCTCCTTCCGCGACCCCGACGACGGCGCCATCTTCGCCCGCGGCGCCCAGGACGACAAGTGCATCGCCATGCAGTACCTCGAGTCCATCCGCAATCTCCGGAGCCGCGGCTTCGTCCCCGCCCGCTCCGTCCACATCTCCCTCGTCCCCGACGAGGAGATCGGTGGCTTCGATGGAGCCGCCAGGTTCGTCATGTCCGAGGAATTCGAGGCGCTCAATGTCGGGTTCGCGCTCGACGAAGGGCAGGCCAACCCTGGGGACGAGTTTAGGGTTTTCTACGCCGATCGGTTCCCTTGGGGGTTGAAGATCAAGGCCAAGGGACAACCCGGGCACGGTTCTAGGATGTATGATGGTAGTGCGATGGAGAATTTGATGAAGAGTGTTGAAGTTATTAGTAGGTTTAGGGAGAGTCAGTTTGATGTGGTTAAGGCTGGGAAGGCTTCCAATTCTGAGGTTGTTTCGGTTAATCCTGTTTATGTCAAAGCTGGGGTTCCCTCTGAAGATGGGTTTGTGATGAATGTGCAACCTTCTGAAGCGGAAGCTGGTTTTGATCTTAGGTTGACACCTATGTTGGACCCGGAGGAAATGAAGAGGAGAATTGCTGCTGAATGGGCTCCGGCTGATAGAAACATGTCGTATGAGAAACTTGAAAGGCACAGTTATGTTCCTGATTTTACTGAATTTGTGTCTGTTCTATTGGAACTGATGGGCTCCCTGTGGGGTTGGTTGGTCAGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03331	2399	18860	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14677	ACY1	EC:3.5.1.14	2-Oxocarboxylic acid metabolism	map01210
			2-Oxocarboxylic acid metabolism	map01210
			Biosynthesis of amino acids	map01230
			Biosynthesis of amino acids	map01230
			Arginine biosynthesis	map00220
			Arginine biosynthesis	map00220

Gene Ontology

biological_process

GO:0006508 proteolysis

GO:0006520 cellular amino acid metabolic process

GO:0008152 metabolic process

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0004046 aminoacylase activity

GO:0008237 metallopeptidase activity

GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003331s00041636.2	PF01546.23	Peptidase_M20	108	263	1.80E-19
Glyur003331s00041636.2	PF07687.9	M20_dimer	227	330	1.40E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	76.748
SRR1783600	control	76.746
SRR1783602	moderate drought stress	88.000
SRR1811619	moderate drought stress	87.466

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	57.744
DRR006520	Root Summer glycyrrhizin high producing strain	57.401
DRR006521	Root Winter glycyrrhizin high producing strain	55.906
DRR006522	Root Winter glycyrrhizin high producing strain	54.107
DRR006523	Root Summer glycyrrhizin low producing strain	81.387
DRR006524	Root Summer glycyrrhizin low producing strain	81.163
DRR006525	Leaf Summer glycyrrhizin high producing strain	40.987
DRR006526	Leaf Summer glycyrrhizin high producing strain	40.446

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	57.878
SRR2868004	Drought Stress (root)	60.199
SRR2967015	Control (root)	58.195

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.969
SRR9715740	Leaf	29.232
SRR9715741	Leaf	30.919
SRR9715739	Root	42.310
SRR9715742	Root	49.985
SRR9715743	Root	49.098

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	77.710
SRR8749028	MeJA induced 9h	39.493
SRR8749029	MeJA induced 9h	64.751
SRR8749030	Uninduced	25.435
SRR8749031	Uninduced	23.500
SRR8749032	Uninduced	35.520

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.729
SRR8400027	Control - Root	38.649