Gene detail

Gene detail information of Glyur003316s00046665

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27290.1	6.00E-107	S-locus lectin protein kinase family protein
NR	XP_007149655.1	0	hypothetical protein PHAVU_005G088000g [Phaseolus vulgaris]
Swissprot	tr\|O81832\|Y4729_ARATH	7.00E-124	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor)
trEMBL	tr\|V7BUN3\|V7BUN3_PHAVU	0	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}

Sequence

Transcript Sequence

>Glyur003316s00046665.1
ATGGCAAGAGCAACAAGANATGAGGTACTATTCGTTCTTTACTCTCTCCAATTCTCCCTCTTATTAATTCCCATGGTTCTTCCCCTTAGAAGCATTACTCCAGACATACCAATCCACTATAACGAGACCCTGGTTTCCGAATCCGGAAAATTCGAAGCCGGGTTCTTCNCCTTGGGGAATTCACAAAGCCTATTATACTTTTGTATATGGTACAAGAGTTTTAGACCTAGAACAATTGTATGGGTAGCCAATAGAGATACCCCATTAGATAACACCAACACCNCAGCAATTTTCAAACTCACAGATAAAGGAAATCCAGTCATAATTGATGGCTCAGGAACCACAATCTGGTACTCCAATGCATCAACAACAACAACAAATGCAGAGAAGCCTGTTCTGTTGCTCTTGGACACAGGTAACCTNGTTGTGAGAAATGGAAGCATCAATGGGAAAACTCTATGGCAAAGCTTTGATTACCCTGGTGACACTTTACTCCCTGGGATGATACTTAAGGTTAATAGAGCAAGTGGTGTGTATAATTCCCTGACCAGTTGGAAAAGCACAGGTGATCCTTCAAGAGGTGAGTTTTCATACCACTTAGATGGTCATGGTTTTCCTCAACTATTCATTACTAAGGGATCAACATTGATATACAGATTAGGCTCATGGAATGGGTTTTTCTTCAGTGGGGTTCCTTGGGAAACACTCTACAGTTACTTCACTTTCTCCTTTGAGCTATTTGAGGAGGAGGTTCGTTTTGGATATGAGCCCTTGAACGGTTCGATTGTTTCAAGGTACATGATCACATCAACGGGCTCTGTGCAGCGTTTCCTTTGGTCATATCAGACAGAAAGTTGGCAACTTTTCCTTGCTGGCCCCGTGGACCGGTGTGATAACTATAACTTGTGTGGTGCGAACTCTAATTGCAACGTGGACAACACTCCACAATGTGAATGCGTCACAGGTTTCGCGCCGAAATCTCAAGAGAAATGGGATTTATTGGATTATTCTGATGGGTGTGTTAGGAAGGTGAGATTGGATTGTGATGACAGAGATGGGTTTCTTAAGTATACAAGAATGAAGTTGCCAGACACGTCTTCCTCATGGTTTGATAAGAGCAAGGATCTTCAGGAATGTGAGAAACAATGCAGGAAAAACTGCAGTTGCACAGCATATGCAAGTTTAGATATTAGAAATGGTGGGAGTGGCTGCATGATTTGGTTTAATAACATCATGGACATGAGGAAAGAAAGCTCTGTAGGACAAGAGATTTACATAAGAGTGGCAGCTTCAGAATTAGGTAATTCAAAGAATAATAACTCAAACAAGAAAAAGCTAACAGGTGTTCTAATAGGAATTGGAATCCTCTTCTTGGTCACAACAATAGTTGGATATTTCATCTATCGAAGGAGGAAGAAACTCAGGAAGTCAGGTAGGGACACAACAATTAACCATGAAGATCACATTGACAATAATGATAAGGAAAGCATTGACTTACCAACATTTGATTTTTCAACCATTGCTAATGCCACAAATAACTTCTGCCCCAGTAACAAACTGGGAGAAGGTGGATATGGACCAGTTTACAAGGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03316	3933	6053	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0048544 recognition of pollen

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003316s00046665.1	PF01453.19	B_lectin	76	192	5.60E-31
Glyur003316s00046665.1	PF00954.15	S_locus_glycop	218	327	3.50E-30
Glyur003316s00046665.1	PF08276.6	PAN_2	348	414	1.10E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.211
SRR1783600	control	1.018
SRR1783602	moderate drought stress	0.746
SRR1811619	moderate drought stress	0.805

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.447
DRR006520	Root Summer glycyrrhizin high producing strain	0.606
DRR006521	Root Winter glycyrrhizin high producing strain	0.570
DRR006522	Root Winter glycyrrhizin high producing strain	0.746
DRR006523	Root Summer glycyrrhizin low producing strain	0.842
DRR006524	Root Summer glycyrrhizin low producing strain	0.906
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.941
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.931

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.173
SRR2868004	Drought Stress (root)	5.354
SRR2967015	Control (root)	5.049

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.411
SRR9715740	Leaf	1.299
SRR9715741	Leaf	2.492
SRR9715739	Root	0.043
SRR9715742	Root	2.567
SRR9715743	Root	1.637

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.999
SRR8749028	MeJA induced 9h	11.382
SRR8749029	MeJA induced 9h	1.833
SRR8749030	Uninduced	4.603
SRR8749031	Uninduced	4.236
SRR8749032	Uninduced	2.285

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.229
SRR8400027	Control - Root	4.943