Gene detail

Gene detail information of Glyur003314s00037684

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05030.1	0	Major facilitator superfamily protein
NR	AES71645.2	0	sugar porter (SP) family MFS transporter [Medicago truncatula]
COG	YP_745085.1	1.00E-66	sugar-proton symporter [Granulibacter bethesdensis CGDNIH1]
Swissprot	tr\|Q0WVE9\|PLST1_ARATH	0	Probable plastidic glucose transporter 1
trEMBL	tr\|G7J6R3\|G7J6R3_MEDTR	0	Sugar porter (SP) family MFS transporter {ECO:0000313\|EMBL:AES71645.2}

Sequence

Transcript Sequence

>Glyur003314s00037684.1
AGCAAATCGCTTGATATTAATTAAGCAATAAGCAATAAGGTCCTGTTGTTATTTTTTTTGTTGTTAATTTTCAGTTTTGAAGGATGAGTTCCGTTCGTTTTGTATCCGCAGCGATCGTCTCCAGTTCCACTCACTCCAACCCCAAACTCGTTTCCTTCTCCAAAACCAAAACCAAAACCAAAATCAGACTCAAAACCAAACTTCACACTCTCAGTTGTTCCTCCTTTCGCCTTTCCAAGCTCAGAGTTTCAGCCCTCAAGGATCAGCTTCCCGAGTCACAGACTCGTAATGCTGCGGATGAAGGAACGAAAGCAAAACTTCCATCGGATGAAAATGGCGGAGGCGGAGGAGGATTTGACTCTGGATGGTTGCCTGCTTTTCCACACGTTCTGGTTGCTTCAATGTCCAATTTCATATTTGGGTATCACATCGGGGTCATGAATGGTCCTATTGTTTCCATTGCCCGGGANCTTGGTTTTGAGGGAAACTCATTCATTGAGGGACTTGTTGTCAGTATATTTATTGCTGGTGCATTTATTGGGAGCATAAGCACTGGTTCTTTGGTCGACAAACTTGGTTGTCGGCNCACATTTCAGATTGATGCCATACCCTTAATCCTTGGGGCTATAATAAGTGCAAATGCCCACTCCTTGAATGAGATACTTGGGGGAAGATTTCTTGTTGGTCTTGGTATAGGTGTGAATACTGTTCTTGTTCCGATATATATATCTGAGGTTGCTCCAACAAAATATAGGGGTGCCCTAGGGTCCTTATGTCAAATTGGCACTTGCCTTGGTATTATTGCTTCACTATTTCTTGGAATTCTTTCTGAGAACNATCCACATTGGTGGAGGACAATGCTGTATATTGCAAGCGTCCCAGGTTTTTTTGTTGGTCTGGGTATGCAATTTGCTGTTGATAGTCCACGCTGGCTTTGCAAGGCTGGGAGAATAAATGATGCTAAAAAAGTAGTATGTGAGCTTTGGGGAGCATCTCAAGTTGAGAGTGCAATTAAAGAATTCCAGTCTGTNGGCGAAAATGATGGTAGTGATTTGGACAGCAGATGGTCAGAGATCTTGGAGGAGCCGCATTCTAGAGTTGCCTTCATTGGAGGCACTCTTTTTGTACTTCAGCAGTTTGCAGGCATAAATGGAGTTCTGTATTTTTCATCATTGACCTTTCAAGATGTTGGAGTTCAAAGTAGTGCTTTAGCAAGCTTGTTTGTTGGGCTTACGAACTTTGCAGGTGCACTTTGTGCTTTATACTTAATTGATAGGGAAGGGAGAAAGAAGCTTCTAGTAGGNAGCTACATAGGAATGGCAATTTCAATGTTTCTTGTGGTCTGTGCTGTCATCTTTCCATTGGATGAACAACTCAGCAACAACCTATCAATATTAGGAACTATCATGTATATATTCTCTTTTGCAATTGGAGCTGGCCCTGTAACTGGCATCATTATACCAGAGCTGAGCAGTACCAGGACTCGGGGGAAGATCATGGGGTTCAGTTTTTCCACCCATTGGGTTTGCAATTTTGTGGTGGGATTATTCTTCCTTGAGTTGGTGGAGAAAATTGGAGTAGCACCCGTATATGCTAGCTTTGGAGCAGTTTCCCTGTTAGCCGCAGCATTTGCATATTACTTCCTAGTAGAAACTAAGGGGCGCTCTCTAGAAGAAATTGAACGGTCCTTGAAAGCTTGAGCAAATGGTGAATGTTATGATACAGGACAGATTTGTTTCGTGGTTAAGCATCAATAAGAGCATAACCAATCACAAAAAACAGGATGTGGGAGACTGCTTTCAGACTGGGATCCAAGATAATGCAACATGCCAATAAACAGCATTAGTCTACATCTCTGCAATCTTAGCTGTTTCTTCTAATCAATGTATAATGAAATTTTGACCTTTTTTTTATTTCCATTCTTCAATAGTTCCCTACAGTTTGTAAATTATGTGTCGTACTCGTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03314	6365	12380	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003314s00037684.1	PF00083.19	Sugar_tr	103	534	4.90E-98

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.832
SRR1783600	control	7.963
SRR1783602	moderate drought stress	11.197
SRR1811619	moderate drought stress	10.977

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.597
DRR006520	Root Summer glycyrrhizin high producing strain	11.415
DRR006521	Root Winter glycyrrhizin high producing strain	10.015
DRR006522	Root Winter glycyrrhizin high producing strain	10.358
DRR006523	Root Summer glycyrrhizin low producing strain	13.515
DRR006524	Root Summer glycyrrhizin low producing strain	13.743
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.825
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.909

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.233
SRR2868004	Drought Stress (root)	22.968
SRR2967015	Control (root)	22.230

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.901
SRR9715740	Leaf	14.176
SRR9715741	Leaf	11.957
SRR9715739	Root	3.773
SRR9715742	Root	8.090
SRR9715743	Root	7.298

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.768
SRR8749028	MeJA induced 9h	10.024
SRR8749029	MeJA induced 9h	4.454
SRR8749030	Uninduced	8.493
SRR8749031	Uninduced	1.812
SRR8749032	Uninduced	2.239

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.655
SRR8400027	Control - Root	21.453