Gene detail

Gene detail information of Glyur003314s00037683

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G05755.1	5.00E-72	Nodulin MtN21 /EamA-like transporter family protein
NR	KEH35139.1	1.24E-139	nodulin MtN21/EamA-like transporter family protein [Medicago truncatula]
COG	YP_008374366.1	5.00E-08	Permeases of the drug/metabolite transporter (DMT) superfamily [Cycloclasticus zancles 7-ME]
trEMBL	tr\|A0A072UZA3\|A0A072UZA3_MEDTR	5.00E-140	Nodulin MtN21/EamA-like transporter family protein {ECO:0000313\|EMBL:KEH35139.1}

Sequence

Transcript Sequence

>Glyur003314s00037683.1
AGCAAAACAGAAAAACAGAAAACGTCACTCATTATTGGGTGCCCCCACCTGTCTCTGACCGTTTCGTTGTCACTCTCAAGTTTCGACCCCGTTCGTCAACCTTCTCCTTCTTCTTCAGCAAAACCAACCTTCGATTCGACGTCGTTCCGTTCCGAACTTTGCAAATCTGAATGCGCCATCAACACCACTATGGAGGCATCACCCCCTAAATCCAGCGATGCAGATCACGTCATCGAGCTCATTGTGCGGGACACACCACCACCTCCTCCTCCACCACTACCACCATCTTCTTCCGGCGACGACGCCGATGATGCTGTTATTGACCAAATTGCCCCTCTCCTCTCTCACCCAGAGAGACCTAAGATCAACATCTTCACCGCTTCTTACCCTCGAAGAAAGCCCAGAATTATATTGTGGGTATGGAATGGGTCCAGATACTCTGGTTTGCTCTGTATGGCCCTCTCATCTACCATCTATTTTCTCATGGGACTTCTTTCCAATATTTTTTCTGTTCAGGCAATTCCTTTGTTTGAGACTGCTTTTACAAGATGTACAATTATCTTGATACTGTCATATTTGTGGTTGAGAAGGAGTGAACAGCCACTATTTGGAACATCCCATGTTAGAATCATTTTACTTTTAAGGGCCCTTGCAGGCTGTATATCGATGTCAAGTTTTAGGTTGCCTTTTTCTCAGGCTGTTTTGTTGAATTCAACAACTCCAATTATGGCTTCAATTATGGCAAGGGTCATTTTGCGTGAGAAATTAAAAATTGCTGATATTGCAAGTCTTGCTTGCAGTTTTTTTGGTGTGCTCTTCTTCTTCCGAGAAATGCTTGCTAGACAAGGACAGTTAGTCAAAGCTGAGGAAGCAAGCAATGCATATGCTAAGCCAAGTCATCATATATTTGAAATCTTATTGGGCCTCTTTTCATCAATAATTGGTGGAACTAGTTACTGCCTTATAAGGGCTGGAGCTAAGGCATCCGATCAGCCACTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03314	2280	5777	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003314s00037683.1	PF00892.15	EamA	171	275	4.70E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.145
SRR1783600	control	3.498
SRR1783602	moderate drought stress	3.452
SRR1811619	moderate drought stress	3.280

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.510
DRR006520	Root Summer glycyrrhizin high producing strain	2.115
DRR006521	Root Winter glycyrrhizin high producing strain	2.245
DRR006522	Root Winter glycyrrhizin high producing strain	1.971
DRR006523	Root Summer glycyrrhizin low producing strain	4.429
DRR006524	Root Summer glycyrrhizin low producing strain	3.927
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.151
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.319

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.719
SRR2868004	Drought Stress (root)	10.800
SRR2967015	Control (root)	7.450

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.346
SRR9715740	Leaf	2.227
SRR9715741	Leaf	4.118
SRR9715739	Root	2.438
SRR9715742	Root	2.201
SRR9715743	Root	1.223

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.788
SRR8749028	MeJA induced 9h	5.520
SRR8749029	MeJA induced 9h	0.999
SRR8749030	Uninduced	6.065
SRR8749031	Uninduced	0.784
SRR8749032	Uninduced	0.680

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.647
SRR8400027	Control - Root	5.087