Gene detail

Gene detail information of Glyur003305s00039350

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G47230.1	2.00E-116	CYCLIN A3;4
NR	CAB77269.1	0	cyclin A3.1 [Pisum sativum]
Swissprot	tr\|Q9FMH5\|CCA31_ARATH	3.00E-143	Putative cyclin-A3-1
trEMBL	tr\|Q9M4K9\|Q9M4K9_PEA	0	Cyclin A3.1 {ECO:0000313\|EMBL:CAB77269.1}

Sequence

Transcript Sequence

>Glyur003305s00039350.1
ATGGCCGCTCAAGAGAACTTCGCGGCGCCGCCACGCCCCCAGCGCGAAGCAAAGAAGAGAGCCGCAGCTGCCATATGCGAACTTCGCAAGAAGAAGCGCGTCGCATTAGGCGACATCACCAATGTTGCCGACGCCGTTTCCCCACCGGAGAAACCCGCTTCCGAGACTCACAAGCAGAAAAGAAGAAACACCGGAAAATCAANTTCAAATCCCCCGGCGCCGGAGAAGCCCGAAGACCCCCAATTATGTGGGCCCTACGTTTNTGATATTTACGACTACCTTCGTAAAATGGAGGTGGATCCCAGTAGAAGACCGTTACCTGATTATATCCAGAAAGTTCAGAGGGACGTTAATGCTAACATGAGGGGTGTTCTGGTTGATTGGTTGGTGGAAGTTGCCGAGGAATACAAGCTTGTTTCAGACACTCTTTATTTCTCTGTTTCTTACATTGATAGGTTTCTGTCTTTGAATCCTCTTAGTAGACAGAGGCTTCAATTACTCGGGGTTTCTTCCATGCTTATTGCTTCAAAATACGAGGAGATTAAGCCACCTGAGGTGGAGGACTTTTGTTACATCACAGACAACACATACTCCAAGGAAGAGGTTGTGAACATGGAGGCTGATATTTTGAAGGCTTTGAAGTTTGAATTGGGCGGTCCTACTGTAAAGACATTTCTAAGGCATGTGTGCTTTATTGATTTTATTCTTCTTGTGTTGAATGGTCTTGTTACTTCTGACCTACAGTTTGAGTTCCTTAGCTGTTACCTTGCTGAGCTCAGTTTGGTGGATTATAATTGTGTGAAGTTCTTGCCTTCTTTGGTGGCCGCATCTGTGGTGTATCTAGCACGTTTTATGTTAAGCCCAAAGACGCATCCTTGGAATTCAGCGCTCCATCAACTCACCAGGTATAAACCTGCTGAATTGAAGGAATGTGTTCTAAACATACATGACTTGTACCTTAGTAGGAGAGGGGGCTCTTTGCAAGCTGTGAGAGAGAAATACAAACAGCATAAGTTCAAATGCGTGGCAACAACACCTTCTCCTCCCGAGATACCTCTTTCTTTTTTTGAATTTAGTGGGACAGATCCTTAGGCAACTGTGACTTGGTTTTTCTTGCTATGGCTTTAGTTTCAACTATTGGCAGAGGCATGAGAAAAGGGTCTCCTGACATGAAGATTGAGGTGATTTGCTTATGCTGACTGATGATGGGCTTGCCATGAAATGCTGTGGCATTAATGTATGCATCGCTGGCCTCACTGACTTTATGACTTAACTCCGTGTATGACATGAGATCAATCCACTTAGGTTTTCTTTTTCAACAATTTAGAGTTCTCTTTGGGAGTGTTCGTTCAAGGATATTTGATTTCTTTTTATGTATAGGGAAGTTTTATACATTTTTGTCTTAGTTTTTCCATTCTATGATGTACAAGCTCTGATGTTCAGAAATCAAATTGTCAGCAATAGAAGTGTTGGATTGGTTGTTACTTTATCACATCTGTTTGCTTTGGCTTTGTACTTAAACTTTCTTTTTTCTAGTTATAATTCTCACATCTCAGTTATTTTCTGATTATGGATAGGTCTTTAGAAACATTAGAAGGATATTTGATTTCTTTTTTATGCATATGGAGGTGTTATATGTTTGACTCTCTGTTCTATGATGTCCAAGTGCTGATGTTCAAAAAGCAAATTGTCATCAATAAAATGTTGGATTGGTGACTTTATCGCATCTGTTTGCTTTGGCTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03305	18155	20812	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003305s00039350.1	PF00134.18	Cyclin_N	89	217	5.30E-43
Glyur003305s00039350.1	PF02984.14	Cyclin_C	220	347	3.40E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.879
SRR1783600	control	2.968
SRR1783602	moderate drought stress	2.147
SRR1811619	moderate drought stress	1.858

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.768
DRR006520	Root Summer glycyrrhizin high producing strain	11.751
DRR006521	Root Winter glycyrrhizin high producing strain	4.842
DRR006522	Root Winter glycyrrhizin high producing strain	4.827
DRR006523	Root Summer glycyrrhizin low producing strain	22.217
DRR006524	Root Summer glycyrrhizin low producing strain	21.857
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.678
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.598

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.866
SRR2868004	Drought Stress (root)	5.130
SRR2967015	Control (root)	5.839

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.083
SRR9715740	Leaf	2.440
SRR9715741	Leaf	2.045
SRR9715739	Root	11.637
SRR9715742	Root	12.944
SRR9715743	Root	12.729

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	88.610
SRR8749028	MeJA induced 9h	45.896
SRR8749029	MeJA induced 9h	56.601
SRR8749030	Uninduced	31.520
SRR8749031	Uninduced	30.710
SRR8749032	Uninduced	50.618

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.043
SRR8400027	Control - Root	9.762