Gene detail information of Glyur003300s00041889 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G05940.1 | 8.00E-146 | ROP guanine nucleotide exchange factor 5 |
| NR | XP_003552856.1 | 0 | PREDICTED: rop guanine nucleotide exchange factor 5-like isoform X1 [Glycine max] |
| Swissprot | tr|F4K295|ROGF5_ARATH | 0 | Rop guanine nucleotide exchange factor 5 |
| trEMBL | tr|K7MPM9|K7MPM9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G03610.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03300 | 8464 | 12437 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003300s00041889.1 | PF03759.8 | PRONE | 102 | 164 | 8.10E-29 |
| Glyur003300s00041889.1 | PF03759.8 | PRONE | 162 | 356 | 3.50E-85 |
| Glyur003300s00041889.1 | PF03759.8 | PRONE | 357 | 394 | 4.40E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.440 |
| SRR1783600 | control | 2.585 |
| SRR1783602 | moderate drought stress | 2.230 |
| SRR1811619 | moderate drought stress | 2.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.991 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.112 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.967 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.969 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.041 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.713 |
| SRR2868004 | Drought Stress (root) | 4.037 |
| SRR2967015 | Control (root) | 5.348 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.335 |
| SRR9715740 | Leaf | 1.242 |
| SRR9715741 | Leaf | 0.791 |
| SRR9715739 | Root | 0.219 |
| SRR9715742 | Root | 1.228 |
| SRR9715743 | Root | 1.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.615 |
| SRR8749028 | MeJA induced 9h | 2.393 |
| SRR8749029 | MeJA induced 9h | 0.907 |
| SRR8749030 | Uninduced | 0.001 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.271 |
| SRR8400027 | Control - Root | 7.141 |