Gene detail

Gene detail information of Glyur003292s00043210

Functional Annotation

Database	Orthologs	Annotation
NR	XP_003545882.1	PREDICTED: polyphenol oxidase A1, chloroplastic-like [Glycine max]
Swissprot	tr\|Q06215\|PPO_VICFA	Polyphenol oxidase A1, chloroplastic (Precursor)
trEMBL	tr\|I1MEE6\|I1MEE6_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G07710.1}

Sequence

Transcript Sequence

>Glyur003292s00043210.1
ATGGCATCTATCCCTCTATCCTTCTTGTCCACTACTACTTTCTCTCCGAACCCCAACATCTCCCCTCCTTCCCTACACTATCCATTTTCCCAAAAACAATTCCAATATTCCTCTAAACATAGAAACCCAAAACACCATCATCGCATTTCTAGAGTGGCATGCAGTTGCAATAATGGTAACCAAAATTACCAAAACAACCCTAAAGATGGTCAAGAACTACAACCACCACTAGAACTTGATATTGTAGGAAACAGAAGGAACATTGTGATAGGGCTAGGAGGACTTTGTGGTGCTGCCGCCACTACTCTAATTAACAACCCTTTTGCTTTTGCTGCTCCAGTGTCCCCTCCAGACCTCACCACATGTGGTCCACCAGACTTACCTGAAGGTGCAAAACCCACCAATTGTTGCCCACCAACTTCCACAAACATCATCGATTACAAGCTCCCTAATAATCGCCTCTTGCGGGTACGACCAGCCGCACACTTGGTGAGTGATAAGTACCTTGAAAAATACAAGAAAGCCCTTGATCTCATGAAAGCGCTTCCATCCGATGACCCACGCAATTTCACCCAACAAGCTAACATCCATTGCGCTTATTGTGATGGTGCCTATCACCAAGTAGGGTTTCCCGATCTTGACCTCCAAGTCCATAATTCTTGGCTCTTCTTTCCCTTCCATCGTTGGTACCTTTATTTCTATGAGAGAATCTTGGGGAGCTTGATCAATGACCCCACTTTTGCCTTACCGTTTTGGAATTATGATGCTCCAGGGGGCATGCAAATTCCCTCCATTTACACGGACCCCAAATCACCCCTCTATGATGCCCTCCGGAATGCCAATCATCAACCTCCAACACTTGTGGACTTAGACTATAATCGTGACGATAATCCTAGTGCGCCCACTGGCAACATCTCCGCCAATCTCACTATAATGCAAGTTGTCTCTAATGCTAAGACCTCAAGACTCTTCCTTGGAAACACTTACCGTGCTGGAGATGAACCTGATCCTGGTGCTGGCTCGGTGGAGAACGTTCCACATGGTCCTGTCCATAGATGGACTGGTGATAACAATCAACCTAACTTGGAGAACATGGGGAATTTCTACTCGGCTGCAAGAGACCCCATTTTCTACTCTCACCATTCAAACATTGATAGGATGTGGTCTATATGGAAAACACTAGGTGGGAAAAGAAGGGATTTCACCGACCCAGATTGGTTAGAATCTGGGTTTCTCTTCTACGATGAGAATAAGAACCTTGTGCGTGTAAAGGTCAAGGATTGCCTTGACACAACAAAGCTAGGGTATGTTTACCAAGAGGTTGATATTCCGTGGCTAAAGGCCAAGCCCACACCGCGTAGGTCAAGGGTCCAAAAGGTAGCACAACATTTTGGCATTGGTGCAGCACAAGCTGTAGAGACATCAAGGAATAATAATCATGTCAAGTTCCCATTGGTTTTGGATTCGGTTGTGAGTACCACGGTGAAGAGGCCCAAGAAGTCGAGGAGCAAGAAGGAGAAGGAAGAAGAGGAAGAGGTTTTAGTGATTGAAGGGATTGAGTTCGAGAGGAACAATGGTATCAAGTTTGATGTGTTCATCAATGATGAAGATGACAAGGTCATTCGGGCAGACAATACAGAGTTTGCCGGAAGCTTTGTGAGTGTGCCTCATTCGCATAAGCACAAAAACAAGAAGATGAACACTTCCTTTAGACTAGGGTTAACCGATTTGTTGGAGGATTTGGAAGCTGAAGATGATGATAGTGTTGTGGTGACATTGGTTCCAAGGTATGGGAAAGGACTTGTCAAAATCAGAGACATCAAGATAGTGTTTGAAGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03292	17258	20429	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00422	E1.10.3.1	EC:1.10.3.1	Tyrosine metabolism	map00350
			Isoquinoline alkaloid biosynthesis	map00950

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0046148 pigment biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0004097 catechol oxidase activity

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003292s00043210.1	PF00264.15	Tyrosinase	188	393	1.60E-35
Glyur003292s00043210.1	PF12142.3	PPO1_DWL	400	453	8.50E-31
Glyur003292s00043210.1	PF12143.3	PPO1_KFDV	483	610	5.80E-56

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.597
SRR1783600	control	15.457
SRR1783602	moderate drought stress	7.285
SRR1811619	moderate drought stress	7.342

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.100
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.100

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	71.929
SRR2868004	Drought Stress (root)	189.645
SRR2967015	Control (root)	230.585

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.729
SRR9715740	Leaf	1.329
SRR9715741	Leaf	15.894
SRR9715739	Root	13.600
SRR9715742	Root	16.939
SRR9715743	Root	13.912

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.681
SRR8749028	MeJA induced 9h	31.611
SRR8749029	MeJA induced 9h	5.960
SRR8749030	Uninduced	549.412
SRR8749031	Uninduced	525.223
SRR8749032	Uninduced	197.235

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	140.119
SRR8400027	Control - Root	89.719